Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00456 ATGACTGAGGGAAAGATAGTTGAATCCGCAGAAGCTCTTAAAAGTCTGGAGGACTTGGATCCTCAGAAGAAACCCAAACGAAACAAGTATGCCTTTGCATGTGCTATGTTGGCTTCCATGacttccatcttgcttggctatgATATTGGCGTGATGAGTGGAGCAGCCATATACATACAAAGAGACCTGAAAGTGTCGGACGTGAAAATCGAGATCCTTCTTGGAATCATCAACCTCTACTCTCTGATAGGGTCATGCCTGGCCGGCAGAACCTCGGACTGGATAGGGCGGCGTTACACCATCGTCTTCGCCGGCGCAATCTTCTTCGCCGGAGCCATTCTCATGGGCTTCTCCCCCAACTACTCCTTCCTCAGGTGCGCCCGCTTCGTCGCCGCCATTGGCATCGGCTACGCCCTCATGATTGCCCCCGTCTACACCGCCGAGGTCTCACCGGCCTCCTCTCGCGGATTCCTCACTTCCTTCCCCGAGGTTTTTATCAACGGAGGGATATTACTCGGATACATATCCAACTACGCATTTTCCAAGCTCACACTGAAGCTAGGTTGGCGAATGATGCTTGGAATAGGTGCAATTCCTTCTGTGCTCCTAGCGGTGGGAGTGTTGGCGATGCCGGAGTCTCCGCGGTGGCTTGTCATGAGGGGTCGTTTGGGAGACGCAACAAAAGTGCTTAACAAAACCTCCGACACGAAGGAAGAAGCTGAACTAAGACTAGCAGATATCAAACAAGCCGCAGGAATCCCGGAGAGTTGCAACGACGACGTCGTTGAAATCGCTAAAAAGAGCACTGGTGAGGGCGTATGGAAAGAGCTGTTCCTCTATCCCACACCCGCCGTTCGTCACATCTTAATCGCCGCCCTCGGGATTCACTTTTTCCAACAAGCCTCGGGTGTAGACGCCGTCGTTTTGTACAGCCCCAGGATCTTCGAGAAGGCCGGGATCACCAACGACACGGATAAGCTTCTGGCGACCGTGGCCGTTGGATTCGTTAAGACAATCTTCATATTGGTGGCAACGTTTATGTTGGACCGCGTGGGTCGTCGTCCGTTGCTATTGTCTAGTGTCGGGGGCATGGTGCTGTCGCTGCTCACGCTCGCTATCAGCCTCACGATCATTGATCACTCGGACAGGAAACTAATGTGGGCCGTTGGATTGAGCATAGCGATGGTGCTGGCTTACGTGGCCACGTTTTCGATCGGTGCGGGGCCCATCACGTGGGTGTACAGCTCCGAAATATTTCCGCTGAGGCTGAGGGCGCAGGGTGCGGCCGCGGGGGTTGTGGTGAACAGGACCACAAGTGGGGTTATCTCAATGACCTTTTTGTCCCTCACCAAAGCGATTACTATTGGTGGAGCTTTCTTCCTCTATTGTGGGATTGCCTTGGTTGGGTGGATATTCTTTTTCACCGTGCTTCCTGAAACGCGGGGTAAAACGCTTGAGGAAATGGGAGGGGCTTTTGGTAAATTTAGCGCAGCTTCCAAGGATGGAGACCATGCGAATGCCCAAGTCCACCTACGGACCCATGTCCAAACTTAG 1554 0.5238 MTEGKIVESAEALKSLEDLDPQKKPKRNKYAFACAMLASMTSILLGYDIGVMSGAAIYIQRDLKVSDVKIEILLGIINLYSLIGSCLAGRTSDWIGRRYTIVFAGAIFFAGAILMGFSPNYSFLRCARFVAAIGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINGGILLGYISNYAFSKLTLKLGWRMMLGIGAIPSVLLAVGVLAMPESPRWLVMRGRLGDATKVLNKTSDTKEEAELRLADIKQAAGIPESCNDDVVEIAKKSTGEGVWKELFLYPTPAVRHILIAALGIHFFQQASGVDAVVLYSPRIFEKAGITNDTDKLLATVAVGFVKTIFILVATFMLDRVGRRPLLLSSVGGMVLSLLTLAISLTIIDHSDRKLMWAVGLSIAMVLAYVATFSIGAGPITWVYSSEIFPLRLRAQGAAAGVVVNRTTSGVISMTFLSLTKAITIGGAFFLYCGIALVGWIFFFTVLPETRGKTLEEMGGAFGKFSAASKDGDHANAQVHLRTHVQT 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00456 517 PRINTS Sugar transporter signature 42 52 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00456 517 PRINTS Sugar transporter signature 125 144 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00456 517 PRINTS Sugar transporter signature 299 309 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00456 517 PRINTS Sugar transporter signature 393 414 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00456 517 PRINTS Sugar transporter signature 416 428 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00456 517 PANTHER SUGAR TRANSPORTER 14 507 - -
Cca04g00456 517 ProSiteProfiles Major facilitator superfamily (MFS) profile. 34 481 IPR020846 GO:0022857
Cca04g00456 517 Coils Coil 230 250 - -
Cca04g00456 517 SUPERFAMILY MFS general substrate transporter 20 488 IPR036259 -
Cca04g00456 517 Gene3D MFS general substrate transporter like domains 24 494 IPR036259 -
Cca04g00456 517 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 14 507 IPR045262 GO:0015144
Cca04g00456 517 Pfam Sugar (and other) transporter 35 489 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca04g00456 517 CDD MFS_PLT 37 488 IPR044776 GO:0005351
Cca04g00456 517 ProSitePatterns Sugar transport proteins signature 1. 88 105 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca04g00456 517 TIGRFAM SP: MFS transporter, sugar porter (SP) family 21 488 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00456 Cca-Chr4 4508308 4510540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00456 3 508 Organic Solute Cotransporters AT3G18830 70.727 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00456 - - gmx:547958 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00456 04 4508308 4510540 Cca04g00456 04 4508308 4510540 ECH
Cca04g00456 04 4508308 4510540 Cca07g00160 07 2031090 2033998 ECH
Cca04g00456 04 4508308 4510540 Cca10g00299 10 3199125 3201930 PCT