Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00448 ATGTCTGTCACCGACCTCAAGGACCGTCACGCCGCCGCCGCCGACACCGTCAACAACCTCAGACACCGCTTAAAGCAGAAGCGCCTCTCCTTGCTCGACACAGATATTTGTGAGTACGCAAAGTCTCAGGGTAGAGCACCTGTCACCTTTGGACCTACGGATCTCGTTTGCTGTAGAACCTTGCAGGGTCATACGGGAAAGGTGTATTCATTGGATTGGACTTCTGAAAAGAGTCAGATTGTTAGTGCATCTCAAGATGGGAGATTAATAGTGTGGAATGCTCTAACTAGGCAGAAAATTCATGCCATAAAGCTGCCTTGTGCATGGGTCATGACATGTGCTTTTTCACCAACTGGTCAGTCTGTTGCATGCGGTGGCCTTGACAGTGTTTGTTCTATTTTCAATCTCAATTCTCCCACTGACAAGGATGGGAACCTACCTGTTTCCCGGATGCTGAGTGGACATAAGGGTTATGTTTCCTCTTGTCAGTATGTTCCAGATGAAGACACTCACTTAATCACTGGTTCTGGTGACCAGACATGTGTTTTATGGGATATTACTACTGGCCTTAAAACATCTGTCTTTGGAGGAGAGTTTCAGTCTGGACACACTGCAGATGTACTCAGTATCTCCATTAATGGATCCAACTCAAGAATGTTTGTATCTGGTTCTTGTGATGCAACTGCTCGATTGTGGGATACTCGGGTGGCAAGTCGAGCAGTGCGAACATTTCATGGGCATGAGGGAGATGTTAATGCAATCAAATTCTTTCCGGATGGAAATAGATTTGGAACTGGCTCAGATGATGGAACCTGCAGATTATTTGACATTAGGACTGGACATGAACTTCAAGTATATTATCGACAGCACAGTGACAATGACATCCCGCCTGTAACTTCCATTGCATTCTCTGTTTCAGGAAGACTTCTTTTTGCTGGATACACAAATGGAGATTGCTATGTTTGGGACACTTTATTGGCAAAGGTGGTCTTGGATTTAGGATCGCTCCAAGACTCTCATGAGGACAGGATCAGCTGTTTAGGTTTGTCAGCTGATGGAAGTGCCTTGTGTACAGGAAGTTGGGACACAAACTTAAAGATATGGGCATTTGGAGGGCATAGGAGAACAACTTAA 1134 0.4524 MSVTDLKDRHAAAADTVNNLRHRLKQKRLSLLDTDICEYAKSQGRAPVTFGPTDLVCCRTLQGHTGKVYSLDWTSEKSQIVSASQDGRLIVWNALTRQKIHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSSCQYVPDEDTHLITGSGDQTCVLWDITTGLKTSVFGGEFQSGHTADVLSISINGSNSRMFVSGSCDATARLWDTRVASRAVRTFHGHEGDVNAIKFFPDGNRFGTGSDDGTCRLFDIRTGHELQVYYRQHSDNDIPPVTSIAFSVSGRLLFAGYTNGDCYVWDTLLAKVVLDLGSLQDSHEDRISCLGLSADGSALCTGSWDTNLKIWAFGGHRRTT 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00448 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 242 IPR001680 GO:0005515
Cca04g00448 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515
Cca04g00448 377 Pfam WD domain, G-beta repeat 339 368 IPR001680 GO:0005515
Cca04g00448 377 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Cca04g00448 377 Pfam WD domain, G-beta repeat 287 323 IPR001680 GO:0005515
Cca04g00448 377 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Cca04g00448 377 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Cca04g00448 377 Pfam WD domain, G-beta repeat 201 233 IPR001680 GO:0005515
Cca04g00448 377 Gene3D - 9 369 IPR015943 GO:0005515
Cca04g00448 377 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Cca04g00448 377 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Cca04g00448 377 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Cca04g00448 377 CDD WD40 57 369 - -
Cca04g00448 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 280 - -
Cca04g00448 377 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN, BETA SUBUNIT-RELATED 1 373 - -
Cca04g00448 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 368 IPR001680 GO:0005515
Cca04g00448 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Cca04g00448 377 PIRSF GNBP_B 1 371 - -
Cca04g00448 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Cca04g00448 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 235 - -
Cca04g00448 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 337 377 - -
Cca04g00448 377 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Cca04g00448 377 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Cca04g00448 377 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Cca04g00448 377 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Cca04g00448 377 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
Cca04g00448 377 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 1 373 IPR016346 GO:0007165
Cca04g00448 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
Cca04g00448 377 SUPERFAMILY WD40 repeat-like 54 368 IPR036322 GO:0005515
Cca04g00448 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Cca04g00448 377 SMART WD40_4 145 185 IPR001680 GO:0005515
Cca04g00448 377 SMART WD40_4 54 93 IPR001680 GO:0005515
Cca04g00448 377 SMART WD40_4 192 233 IPR001680 GO:0005515
Cca04g00448 377 SMART WD40_4 279 323 IPR001680 GO:0005515
Cca04g00448 377 SMART WD40_4 329 369 IPR001680 GO:0005515
Cca04g00448 377 SMART WD40_4 237 276 IPR001680 GO:0005515
Cca04g00448 377 SMART WD40_4 96 135 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00448 Cca-Chr4 4423822 4427445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00448 70 370 U-box Gene Family AT1G04510 23.099 1.97e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00448 K04536 - gmx:100794776 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00448 04 4423822 4427445 Cca04g00448 04 4423822 4427445 ECH