Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00445 ATGGCGACGGCAGCTTCAAGCGTGAGTGTGAAGCTTCTTCTGTTAGTGGCGATTTTAGTGGTGTTCGTTGTGGTGACGGTGCTTCTGGTCTTCTTCCTCTGCCTCCGCGGCAGCCGGAGCTGCAAGAGCCGGAAGTTGGCCGCGAAACACAGCTCCGGCAGCATCCCTCTGGTCTCGAAGGAGATCACGGTGGTTAAGGCGTTGGATCTCACGCCCAGCGAGGTGGCGGATGACGTGGAGGCTCATCCCAAAAAGGAGGCGGAGATCAAGCTCCAAATTGGTGGGGCCCACCGCGCCGAGATGTCGGTGGAGGATCCCGATATTGGCTGGGGCCGCTGGTACACCATAAGGGAAGTGGAACTCGCCACGCGTGGGTTTTCCGAAGGGAATGTTATTGGAGAAGGAGGGTATGGGGTTGTGTACAGAGGACTTCTACATGATGGTTCCCTCGTGGCTGTCAAGAATCTTCTCAACAACAAGGGTCAAGCTGAGAAGGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTAAGGCATAAGAATTTAGTTCGTTTGGTAGGATATTGTGCAGAAGGTGCACGAAGGATGCTTGTTTATGAGTATGTTGACAATGGAAACTTGGAGCAGTGGCTGCATGGTGACGTAGGACCAATTAGCCCCTTGACATGGGATATTCGAATGAGAATTGCTATTGGGACCGCAAAAGGGCTAGCCTATTTACATGAAGGCTTAGAACCCAAAGTTGTGCACCGGGATATAAAATCCAGTAACATTCTATTAGATAAAAACTGGAACGCCAAAGTATCAGATTTTGGACTTGCGAAGCTCTTAGGATCTGAGAAAACCCACGTGACTACACGTGTAATGGGAACATTCGGATATGTTGCACCTGAGTATGCAAGCTCAGGTATGCTTAATGAGCGCAGTGATGTGTATAGCTTTGGAGTTCTTCTCATGGAGATAATCACAGGAAGAAGCCCCATTGATTATTCAAAACCACCTGGGGAGATGAATTTGGTTGATTGGTTCAAGGCAATGGTAGCAAGTCGTCGCAGTGAGGAGCTAGTTGATCCTTTAATTGAGATTCCTCCCTCTCCAAGATCTTTGAAGCGAGTTTTACTCATTTGTCTGCGATGTATAGACTTGGATGTAGTTAAACGACCAAAGATGGGCCAAATTGTTCATATGCTTGAGACAGATGATTTTCCCTTTCGTTCTGAGCTACGTACGGTTAGAGACAAAGATCCTTTGCCTTCTCATGCAGATGTTTCCATTAAAGTTCCATCGTATCCACCAAAGCATGCAGAAACCGTAGAAAAGTCGAGATGGAGATGA 1335 0.4787 MATAASSVSVKLLLLVAILVVFVVVTVLLVFFLCLRGSRSCKSRKLAAKHSSGSIPLVSKEITVVKALDLTPSEVADDVEAHPKKEAEIKLQIGGAHRAEMSVEDPDIGWGRWYTIREVELATRGFSEGNVIGEGGYGVVYRGLLHDGSLVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVRLVGYCAEGARRMLVYEYVDNGNLEQWLHGDVGPISPLTWDIRMRIAIGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEKTHVTTRVMGTFGYVAPEYASSGMLNERSDVYSFGVLLMEIITGRSPIDYSKPPGEMNLVDWFKAMVASRRSEELVDPLIEIPPSPRSLKRVLLICLRCIDLDVVKRPKMGQIVHMLETDDFPFRSELRTVRDKDPLPSHADVSIKVPSYPPKHAETVEKSRWR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00445 444 SUPERFAMILY Protein kinase-like (PK-like) 106 399 IPR011009 -
Cca04g00445 444 CDD STKc_IRAK 132 398 - -
Cca04g00445 444 ProSiteProfiles Protein kinase domain profile. 126 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00445 444 SMART serkin_6 126 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00445 444 Gene3D Transferase(Phosphotransferase) domain 1 202 408 - -
Cca04g00445 444 PANTHER OS01G0323000 PROTEIN 2 444 - -
Cca04g00445 444 Gene3D Phosphorylase Kinase; domain 1 98 201 - -
Cca04g00445 444 MobiDBLite consensus disorder prediction 415 444 - -
Cca04g00445 444 ProSitePatterns Protein kinases ATP-binding region signature. 132 154 IPR017441 GO:0005524
Cca04g00445 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Cca04g00445 444 Pfam Protein kinase domain 127 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00445 444 PANTHER RECEPTOR-LIKE KINASE 2 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00445 Cca-Chr4 4399536 4403275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00445 2 393 Trihelix Transcription Factor Family AT1G68690 40.299 2.19e-96 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Cca04g00445 Pkinase 9.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00445 - - gmx:100305442 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00445 04 4399536 4403275 Cca04g00445 04 4399536 4403275 ECH
Cca04g00445 04 4399536 4403275 Cca07g00144 07 1818786 1822609 ECH