Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00437 ATGTTCCTCTCATGTCAAAAATACAACCTCTCCGTTCCCCTCTGCACCCCAACATGCACCATTTTCAAGTGTCAAAACCCACACGCCCCCAACGAGCACCACTCCATTCTCCGCAAACACAATTCAAAATCCACAGCGTATCTCCTTCACCACCTCTCCCACAAGGGTGGCTTCGATCACCAACCCGTTCCCATTCCCAAACCCAACCCCGCTGAGCTTCAAGACCCAATGCCCCACGAAGAAAAAGTCAAGGTTTTGGAGCTTTCCCTCGTGCGCAGAAGAACCCCTCAGTTCCCTGGCTCCATCTACGCTCAATCCCCTAGCGACCCTGATGTGGGTTCTTCTCTGCCCCCTCTCCGCACACTCTTTCAGTCCAATGCTGACACTGACGATGGAGACGAGGAGGAGGAGCAAGAGATGATAATGCGCGCTCTCGAGATTCGTAGAAAGGTCACCGAAGAGGTTTTCAAAGAAGCCTTGCGAAGGGGAAAGTTTGGAATCACTTACGCTAACAATTTGGTTAGTAAGTTATCCGGGTTCATTGATTACATCATGATTGAAGCTGCTCACTTGAAAAAATTGCCCCAATATGCAAACTCCACCTTCAATTTACGCGCCAAATTTATAATTGAGGACTCCAGAGTGGTGCCACTTATTAGATGGTTGAAGCATAATGAACTATCGTATCCTCGGATAGCAAAGCTCATTTTGATGTCAAGAGGAAAAACTGATAGCATAAGGAGTCTTGCGGAGTGGTTGAAATCCGTGCGAGTGAAAGGAGAGTTTCTTGGTGTTGTAATGTTGAATGCTGGACAGAATATTTTGCAGCGCAACCATGAGGAACTGGATGAGATTGTTCTGTATTTGGAGTCCAATGGAGTCAGGAATGATTGGATGGGTTATGTTATTAGTCGTTGTCCTCAATTGTTGTCTTACAGCTTGGAAGAAGTGAAGACTCGTGTGCAGTTCTACCTAGATATGGGTTTAAATGAGAAGGATTTTGGCACAATGGTTTTTGATTTTCCTAGAGTACTTGGTTACTATAGTCTGGAACAAATGAATGAAAAGGTTAATTACTTAAAAGATTTTGGGCTTCAAAGTAAGGATGTTGGCAGATTGCTTGCATTTAGGCCACAATTGATGGCGTGCAGCATTGATGAACAATGGAAGCCTCTTGTTAAGTATCTGTATTATTATGGGATCACTCGAGATGGTATGAGGAGAATGCTTACCATTAAACCAATGGTCTTTTGTGCAGACTTGCAGATGACTATCGTGCCTAAGGTACGGTTTTTTGAGGACATAGGGGTTCAGAAGGACGCGATTGGCAACATGCTTGTGAAGTTTCCTCCTCTACTTACATACAGCCTGGACAAGAAGATTAAACCAGTGGTCATATTCTTGATGACCAAAGCTGGAGTCAATGAGAAAGATATTGGCAAGGTTATAGCTCTTGGACCTGAGCTCTTGGGATGTCATATAGTACATAAGCTTGATTTACATGTAAAATATTTTCTGTCTCTTGGCATACGACTTCGGCAATTGGGTGAGATGATTGCTGATTTCCCAATGCTGCTCAGATACAGTACAAATGTTCTTCGTCCCAAGTATATTTATTTGCGGAGAACCATGGTCCGGCCTTTGCAAGATCTCATTGAGTTTCCAAGGTTTTTCAGCTATTCTCTTGAGGGTCGAATTATCCCAAGACACAAGGTTCTAGTGGAGAATCAGATTAATGTGAAGCTGAGATACATGTTGGCTTGCACTGACGAAGAATTCAAGAAAATGGTCAAGGCTATAATTAGAAAGCGCCACAGATTTGAATCTGGTGTCACAAATGAGGATATTACTCATCCCCAATCTGATACTCAGGGATTTGAATCTGCTGTCACAAATGAGGATTTTAGTGCGGATGTTACTACATTCCAGGCATAA 1935 0.4346 MFLSCQKYNLSVPLCTPTCTIFKCQNPHAPNEHHSILRKHNSKSTAYLLHHLSHKGGFDHQPVPIPKPNPAELQDPMPHEEKVKVLELSLVRRRTPQFPGSIYAQSPSDPDVGSSLPPLRTLFQSNADTDDGDEEEEQEMIMRALEIRRKVTEEVFKEALRRGKFGITYANNLVSKLSGFIDYIMIEAAHLKKLPQYANSTFNLRAKFIIEDSRVVPLIRWLKHNELSYPRIAKLILMSRGKTDSIRSLAEWLKSVRVKGEFLGVVMLNAGQNILQRNHEELDEIVLYLESNGVRNDWMGYVISRCPQLLSYSLEEVKTRVQFYLDMGLNEKDFGTMVFDFPRVLGYYSLEQMNEKVNYLKDFGLQSKDVGRLLAFRPQLMACSIDEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCADLQMTIVPKVRFFEDIGVQKDAIGNMLVKFPPLLTYSLDKKIKPVVIFLMTKAGVNEKDIGKVIALGPELLGCHIVHKLDLHVKYFLSLGIRLRQLGEMIADFPMLLRYSTNVLRPKYIYLRRTMVRPLQDLIEFPRFFSYSLEGRIIPRHKVLVENQINVKLRYMLACTDEEFKKMVKAIIRKRHRFESGVTNEDITHPQSDTQGFESAVTNEDFSADVTTFQA 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00437 644 MobiDBLite consensus disorder prediction 99 134 - -
Cca04g00437 644 Gene3D Transcription termination factor 3, mitochondrial 375 603 IPR038538 -
Cca04g00437 644 Pfam mTERF 368 594 IPR003690 GO:0003690|GO:0006355
Cca04g00437 644 Pfam mTERF 249 419 IPR003690 GO:0003690|GO:0006355
Cca04g00437 644 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF2, CHLOROPLASTIC 62 618 - -
Cca04g00437 644 PANTHER CGI-12 PROTEIN-RELATED 62 618 IPR003690 GO:0003690|GO:0006355
Cca04g00437 644 MobiDBLite consensus disorder prediction 99 126 - -
Cca04g00437 644 SMART mt_12 548 579 IPR003690 GO:0003690|GO:0006355
Cca04g00437 644 SMART mt_12 516 546 IPR003690 GO:0003690|GO:0006355
Cca04g00437 644 SMART mt_12 371 402 IPR003690 GO:0003690|GO:0006355
Cca04g00437 644 SMART mt_12 480 511 IPR003690 GO:0003690|GO:0006355
Cca04g00437 644 SMART mt_12 443 475 IPR003690 GO:0003690|GO:0006355
Cca04g00437 644 SMART mt_12 335 366 IPR003690 GO:0003690|GO:0006355
Cca04g00437 644 SMART mt_12 300 330 IPR003690 GO:0003690|GO:0006355
Cca04g00437 644 SMART mt_12 407 438 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00437 Cca-Chr4 4345741 4349701 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca04g00437 mTERF 2e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00437 K15032 - zju:107426883 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00437 04 4345741 4349701 Cca04g00437 04 4345741 4349701 ECH