Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00436 ATGGCTTCTGCAGATGTAGAGTACCGCTGCTTCGTTGGTGGGCTTGCGTGGGCCACCGACAGTGATGCTCTCGAGAAAGCCTTCTCTCAATTCGGCGAGATCGTTGAATCGAAGGTTATCAACGACCGTGAGACTGGAAGATCCAGAGGCTTTGGATTCGTGACTTTTGCCACGGAGCAGGCAATGAAAGACGCGATCGAAGGAATGAACGGCCAGAACCTTGACGGCCGTAACATCACTGTCAACGAAGCTCAGTCTCGCAGCAGCggtggtggcggaagccgtggtggaggcggttacggaggcggcggtggctacggaagtggcggtggtggttacagccgcggaggcggtggtggaggctacggtggtcgtcgtgaaggtggttacaaccgtaatggtggaggcggaggatacggcggtggaggtggttatggcggtggtAGAGACCGTGATTACGGGGATGGTTCCGATGGTGGAAACTGGAGGAACTAG 495 0.3434 MASADVEYRCFVGGLAWATDSDALEKAFSQFGEIVESKVINDRETGRSRGFGFVTFATEQAMKDAIEGMNGQNLDGRNITVNEAQSRSSGGGGSRGGGGYGGGGGYGSGGGGYSRGGGGGGYGGRREGGYNRNGGGGGYGGGGGYGGGRDRDYGDGSDGGNWRN 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00436 164 MobiDBLite consensus disorder prediction 68 164 - -
Cca04g00436 164 SMART rrm1_1 9 82 IPR000504 GO:0003723
Cca04g00436 164 MobiDBLite consensus disorder prediction 73 92 - -
Cca04g00436 164 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Cca04g00436 164 PANTHER GEO13361P1-RELATED 1 164 - -
Cca04g00436 164 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 164 - -
Cca04g00436 164 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Cca04g00436 164 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Cca04g00436 164 Gene3D - 2 107 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00436 Cca-Chr4 4334026 4335193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00436 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 36.709 2.86e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00436 - K13195 gmx:100777821 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00436 04 4334026 4335193 Cca04g00436 04 4334026 4335193 ECH