Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00435 ATGGCTTCTGCTGATGTAGAGTTCCGTTGCTTTGTCGGTGGTCTCGCTTGGGCCACTGACAGCGACGCTCTCGAGAAAGCTTTCTCTCTGTACGGCGACATCGTTGATTCGAAGATTATCAACGATCGTGAGACTGGAAGATCCAGAGGTTTTGGATTTGTGACTTTCGCGTCTGAGCAGTCAATGAAAGATGCGATCGAAGGGATGAACGGCCAGAACCTTGACGGCCGTAACATCACCGTGAATGAAGCTCAGTCCCGCGGCAgtggtggcggaagccgcggtggtggtggtggctacggtggtggcggtggatatagccgtggtggtggtggatatggtggcggcggtggatatggtggtggcggatacggaggacgtcgcgatggtggctacaatcgtaatggtggtggttatggcggtgacagagaccgtggatatggtgacggtggttcacgctactctcgtggtggtgatggtggcggtTATGAAGGAAGTTGGAGAAACTAG 510 0.2863 MASADVEFRCFVGGLAWATDSDALEKAFSLYGDIVDSKIINDRETGRSRGFGFVTFASEQSMKDAIEGMNGQNLDGRNITVNEAQSRGSGGGSRGGGGGYGGGGGYSRGGGGYGGGGGYGGGGYGGRRDGGYNRNGGGYGGDRDRGYGDGGSRYSRGGDGGGYEGSWRN 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00435 169 PANTHER TRANSFORMER-2-RELATED 1 134 - -
Cca04g00435 169 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Cca04g00435 169 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN GRP1A-LIKE 1 134 - -
Cca04g00435 169 MobiDBLite consensus disorder prediction 73 89 - -
Cca04g00435 169 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Cca04g00435 169 Gene3D - 2 107 IPR012677 -
Cca04g00435 169 MobiDBLite consensus disorder prediction 71 104 - -
Cca04g00435 169 SMART rrm1_1 9 82 IPR000504 GO:0003723
Cca04g00435 169 MobiDBLite consensus disorder prediction 124 169 - -
Cca04g00435 169 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00435 Cca-Chr4 4319651 4320435 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00435 10 81 Eukaryotic Initiation Factors Gene Family AT2G23350 44.444 3.03e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00435 - K13195 ccaj:109800369 172.17