Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g00434 | ATGGCTGCTGCAGATGTTGAGTATCGGTGCTTCGTCGGTGGGCTTGCATGGGCCACCGATAGCGACGCCCTCGAGAAAGCCTTCTCTCAATACGGCGACGTCGTTGAATCGAAGATTATCAACGATCGCGAGACCGGAAGGTCCAGAGGCTTTGGATTTGTGACTTTTTCCTCGGAGCAGGCCATGAAGGACGCGATCGAGGGGATGAACGGTCAGAACCTTGACGGCCGTAACATCACTGTCAACGAGGCTCAGTCTCgtggcagcggtggtggcggcagccgcggtggcggtggttacggtggtggcggtggatacaaccgcggtggtggtggatatggtggcggcggcggatatggtggtggtcgtcgtgaaggtggatacaaccgtaatggtggtggtggatatggcggcggcggcggcggctatggcggtggcagagaccgtggttatggtgatggtggttcacgctactcccgcggtggtgatggtggtgctgagggtagctggtgA | 513 | 0.2788 | MAAADVEYRCFVGGLAWATDSDALEKAFSQYGDVVESKIINDRETGRSRGFGFVTFSSEQAMKDAIEGMNGQNLDGRNITVNEAQSRGSGGGGSRGGGGYGGGGGYNRGGGGYGGGGGYGGGRREGGYNRNGGGGYGGGGGGYGGGRDRGYGDGGSRYSRGGDGGAEGSW | 170 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g00434 | 170 | SMART | rrm1_1 | 9 | 82 | IPR000504 | GO:0003723 | |
Cca04g00434 | 170 | MobiDBLite | consensus disorder prediction | 119 | 170 | - | - | |
Cca04g00434 | 170 | PANTHER | GEO13361P1-RELATED | 1 | 170 | - | - | |
Cca04g00434 | 170 | SUPERFAMILY | RNA-binding domain, RBD | 8 | 118 | IPR035979 | GO:0003676 | |
Cca04g00434 | 170 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 8 | 86 | IPR000504 | GO:0003723 | |
Cca04g00434 | 170 | PANTHER | RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED | 1 | 170 | - | - | |
Cca04g00434 | 170 | MobiDBLite | consensus disorder prediction | 73 | 89 | - | - | |
Cca04g00434 | 170 | MobiDBLite | consensus disorder prediction | 70 | 104 | - | - | |
Cca04g00434 | 170 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 11 | 79 | IPR000504 | GO:0003723 | |
Cca04g00434 | 170 | Gene3D | - | 1 | 120 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g00434 | Cca-Chr4 | 4315217 | 4317104 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g00434 | 10 | 81 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 41.667 | 3.87e-11 | 58.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g00434 | - | K13195 | ccaj:109800369 | 174.096 |