Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00434 ATGGCTGCTGCAGATGTTGAGTATCGGTGCTTCGTCGGTGGGCTTGCATGGGCCACCGATAGCGACGCCCTCGAGAAAGCCTTCTCTCAATACGGCGACGTCGTTGAATCGAAGATTATCAACGATCGCGAGACCGGAAGGTCCAGAGGCTTTGGATTTGTGACTTTTTCCTCGGAGCAGGCCATGAAGGACGCGATCGAGGGGATGAACGGTCAGAACCTTGACGGCCGTAACATCACTGTCAACGAGGCTCAGTCTCgtggcagcggtggtggcggcagccgcggtggcggtggttacggtggtggcggtggatacaaccgcggtggtggtggatatggtggcggcggcggatatggtggtggtcgtcgtgaaggtggatacaaccgtaatggtggtggtggatatggcggcggcggcggcggctatggcggtggcagagaccgtggttatggtgatggtggttcacgctactcccgcggtggtgatggtggtgctgagggtagctggtgA 513 0.2788 MAAADVEYRCFVGGLAWATDSDALEKAFSQYGDVVESKIINDRETGRSRGFGFVTFSSEQAMKDAIEGMNGQNLDGRNITVNEAQSRGSGGGGSRGGGGYGGGGGYNRGGGGYGGGGGYGGGRREGGYNRNGGGGYGGGGGGYGGGRDRGYGDGGSRYSRGGDGGAEGSW 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00434 170 SMART rrm1_1 9 82 IPR000504 GO:0003723
Cca04g00434 170 MobiDBLite consensus disorder prediction 119 170 - -
Cca04g00434 170 PANTHER GEO13361P1-RELATED 1 170 - -
Cca04g00434 170 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Cca04g00434 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Cca04g00434 170 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 170 - -
Cca04g00434 170 MobiDBLite consensus disorder prediction 73 89 - -
Cca04g00434 170 MobiDBLite consensus disorder prediction 70 104 - -
Cca04g00434 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Cca04g00434 170 Gene3D - 1 120 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00434 Cca-Chr4 4315217 4317104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00434 10 81 Eukaryotic Initiation Factors Gene Family AT2G23350 41.667 3.87e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00434 - K13195 ccaj:109800369 174.096