Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00432 ATGGCCTCAAGCTCTCTCAAACAAAAGGCTTGTGACTCCTCTTGGACACCAAAACAGAACAAGCTGTTTGAAAAAGCACTTGCAAAATATGACAAGGATACCCCTGATCGCTGGCAGAATGTAGCCAAAGCAGTTGGTGATAAATCTGCGGATGAAGTTAAGAGACACTATGAAATCCTCTTGGAGGATCTCAGGCACATTGAATCTGGCCGTGTTCCTCTTCCTAAGTACAAGTCCATAGGAAGCAGTAGCTGTGTTGATGAAGAAGAGAGGCTTCTGAAGTATCTTAAACTGAATTGA 300 0.4333 MASSSLKQKACDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGDKSADEVKRHYEILLEDLRHIESGRVPLPKYKSIGSSSCVDEEERLLKYLKLN 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00432 99 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 79 IPR044636 GO:0003700
Cca04g00432 99 PANTHER PROTEIN RADIALIS-LIKE 3 1 79 - -
Cca04g00432 99 SMART sant 11 63 IPR001005 -
Cca04g00432 99 Gene3D - 7 74 - -
Cca04g00432 99 CDD SANT 14 61 IPR001005 -
Cca04g00432 99 ProSiteProfiles Myb-like domain profile. 7 61 IPR001005 -
Cca04g00432 99 ProSiteProfiles SANT domain profile. 12 65 IPR017884 -
Cca04g00432 99 Pfam Myb-like DNA-binding domain 13 57 IPR001005 -
Cca04g00432 99 SUPERFAMILY Homeodomain-like 13 69 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00432 Cca-Chr4 4304933 4306969 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca04g00432 Myb_DNA-binding 9.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00432 - - gmx:100798314 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00432 04 4304933 4306969 Cca04g00432 04 4304933 4306969 ECH
Cca04g00432 04 4304933 4306969 Cca07g00139 07 1698262 1699268 ECH
Cca07g00139 07 1698262 1699268 Cca04g00432 04 4304933 4306969 ECH