Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00431 ATGTTGCATTGTCTCAACACTTCCGGGAATATAGACACGACACTCTTGGAAAGACAGAAGTGCCACCAACCTCACTTCTCCGCAACGGAACTTAACGCCGTCTTCTCTTCCAAGAAGAGAAAGGCTGAGACCAATTGCAAGTCCAAGGTCGATAAGAGACTCAAAGTGAGTGCCCGGGAACAGGAAAACAACAACAACGGAACAACTTCCGCGGATACTTCCAAAGGCTCCGAGGTTCAAAACCAAAAACCTCAGTACAttcatgtccgagcgcgtcgtggccatgccactgatagccatagcttggccgaaagaGTTAGGAGGGAGAAAATTAGCGAGAGAATGAAGTATCTGCAAGATTTAGTACCCGGTTGCAACAAAATCGCAGGCAAAGCTGGAATGCTTGATGAAATCATTAACTACGTTCAGTCTCTTCAGCGTCAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACATTGACGAATTGTTTGCCAAAGAGGTGTTTCCATCTTGTGCTCAAAGTTTTCCGAATATAGAGATGGCATCAGATGTGACGAACAACCCCGCGTATCTTCAGTTCAATTCATCTCAGCAACTTGTTTCGTGCTGTGGTGGATTAATAAATAACATGGGAATAAGCCCTGCGAATTTGGGAATTCGAAGGAACATTAGCactaatactactactactaTCCCTGTACCATTGTTGCCCGAAACGTCTTTTGACTCATCATGTTTCGCTCAACTTCTACCCTCCTCAAATTGGGAAGGTGATTTCCAAAGCCTTTACAGTGTTGCTTTTGGTCAAGGGCGAACAGCATCTTTTCCTTCTCAGCCATTTACAGGTCTAGTTGAAGGGAGCAATCTAAAGATGGAGATCAACGTCCCAGCCGCCGCGAGCAACCACGGAGAGCTCAAGTGCTTCCTCCTCTGTCTTCGCCGTCGCTCCCGCTCTCAAATGCGTATCGACTCCACCGCGCTCGATAGACTCTCCTCGTCCAACACCACTCCAACCACTTCCTTCAACCACCGCATCACTATCCCCGATTTTCTAACCCTACACGAAtcctgcgccttcctcctcgtcctcctcaacaacctcctcctctccaatgccccctcccgcattcccctcctcATTTCCCAAACCCTAAATTCAAACCCTCATGCATTCCAATTCGACGACGCAGACGTCACCGAGCACGAACTCCCCGCGCTCCACAATTCGGGGGTTAAGATTGCTGTTGGGAGTGAGGAGGCTATGGGCATTGTGCTACTGCCGTTGGCGGCGCGTGGGACTACCTCTGCCTTGTCAGGAAGCTCAAGGTTCACCGTTCCGAGAAAGTTCTCAAGCACGGCCTCTCCATCTTGA 1395 0.4308 MLHCLNTSGNIDTTLLERQKCHQPHFSATELNAVFSSKKRKAETNCKSKVDKRLKVSAREQENNNNGTTSADTSKGSEVQNQKPQYIHVRARRGHATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFAKEVFPSCAQSFPNIEMASDVTNNPAYLQFNSSQQLVSCCGGLINNMGISPANLGIRRNISTNTTTTIPVPLLPETSFDSSCFAQLLPSSNWEGDFQSLYSVAFGQGRTASFPSQPFTGLVEGSNLKMEINVPAAASNHGELKCFLLCLRRRSRSQMRIDSTALDRLSSSNTTPTTSFNHRITIPDFLTLHESCAFLLVLLNNLLLSNAPSRIPLLISQTLNSNPHAFQFDDADVTEHELPALHNSGVKIAVGSEEAMGIVLLPLAARGTTSALSGSSRFTVPRKFSSTASPS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00431 464 MobiDBLite consensus disorder prediction 60 81 - -
Cca04g00431 464 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 51 282 IPR024097 GO:0006355
Cca04g00431 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 164 IPR036638 GO:0046983
Cca04g00431 464 SMART finulus 101 151 IPR011598 GO:0046983
Cca04g00431 464 MobiDBLite consensus disorder prediction 42 59 - -
Cca04g00431 464 MobiDBLite consensus disorder prediction 42 81 - -
Cca04g00431 464 Pfam Helix-loop-helix DNA-binding domain 99 146 IPR011598 GO:0046983
Cca04g00431 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 145 IPR011598 GO:0046983
Cca04g00431 464 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 51 282 - -
Cca04g00431 464 Gene3D - 92 166 IPR036638 GO:0046983
Cca04g00431 464 CDD bHLH_AtBPE_like 86 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00431 Cca-Chr4 4267499 4271962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00431 38 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 50.704 1.06e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca04g00431 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00431 - - ccaj:109801070 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00431 04 4267499 4271962 Cca04g00431 04 4267499 4271962 ECH
Cca04g00431 04 4267499 4271962 Cca06g01359 06 28440582 28442912 ECH