Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00407 ATGGCTTCATCGAGTGGAACGTGTTCGGGGTCGTCGACTCAGCTTCAGAACTCGGGTTCGGAGGGGGATTTGCAGGTGATGATGGATCAGAGGAAGAGGAAGAGAATGATATCGAATCGGGAATCTGCGCGAAGATCTCGCATGAGGAAGCAGAAGCACTTGGACGATCTGGTTTCGCAGGTGGCTCAGCTGAGGAAGGAGAATCAGCAGATTCTCACAAGCGTCAACATCACCACGCAGCAGTATTTGAGCGTTGAGGCTGAGAATTCTGTGCTCAGGGCACAGGTGGGTGAGCTTAGCCACAGGTTGGACTCTCTCAACGAGATAATCGAGACATATTGCAGTACTGAGACAAAAGGGGTATTaacggtccgttctgacccaaatgctAAAGTAAGCAAGAAAGCAAGACAGTTCACGTACAGCTTTCAGGCTATGGAAATGATGAAGGTGAAAACAGGATCTCCATTTTATTTAAAGAACACAGGCTACCAGAATTATTTTGATGCATTTGTAGAAAAGAAATCTAACTACCTCGAAGAAGATACCCCGGTTAAAGAAAGTGCAATGAATCAGGGTGTAGGCATATAG 591 0.4433 MASSSGTCSGSSTQLQNSGSEGDLQVMMDQRKRKRMISNRESARRSRMRKQKHLDDLVSQVAQLRKENQQILTSVNITTQQYLSVEAENSVLRAQVGELSHRLDSLNEIIETYCSTETKGVLTVRSDPNAKVSKKARQFTYSFQAMEMMKVKTGSPFYLKNTGYQNYFDAFVEKKSNYLEEDTPVKESAMNQGVGI 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00407 196 CDD bZIP_plant_GBF1 32 82 IPR045314 GO:0003700|GO:0006355
Cca04g00407 196 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 151 - -
Cca04g00407 196 Pfam bZIP transcription factor 31 77 IPR004827 GO:0003700|GO:0006355
Cca04g00407 196 Gene3D - 29 84 - -
Cca04g00407 196 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 34 49 IPR004827 GO:0003700|GO:0006355
Cca04g00407 196 Coils Coil 47 74 - -
Cca04g00407 196 PANTHER BZIP TRANSCRIPTION FACTOR 1 151 - -
Cca04g00407 196 MobiDBLite consensus disorder prediction 26 51 - -
Cca04g00407 196 MobiDBLite consensus disorder prediction 1 24 - -
Cca04g00407 196 MobiDBLite consensus disorder prediction 1 51 - -
Cca04g00407 196 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 29 92 IPR004827 GO:0003700|GO:0006355
Cca04g00407 196 SUPERFAMILY Leucine zipper domain 31 83 IPR046347 GO:0003700|GO:0006355
Cca04g00407 196 SMART brlzneu 27 91 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00407 Cca-Chr4 4077526 4084167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00407 27 111 bZIP Transcription Factor Family AT4G34590 75.294 8.09e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca04g00407 bZIP_1 4.4e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00407 K25786 - gmx:100101862 187.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00407 04 4077526 4084167 Cca04g00407 04 4077526 4084167 ECH