Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00405 ATGGTTCTCTTTCAACGAACCAAAAAACAAAAAGGAAGACGGAGACTCTTGAAGTGTAGAGAGATAGCAACGCGTGAGGAAAAAACTCAAAGTAAGACAATCAGTTTTGTAAGCCATCCTTGCGGTCGCTCTACAGTTGTCATAAATATGAAGGACAAGAGAGACTTGTATGAATTCGTGTCAGAGTTAATAGTTATGGCTGATGAGGTTGCTTCGCTTGCTAAGAATCCTGAAATTGAGATACAGGATGCTTTTACTGAGTTTGCCTTGTTGGTTGAGAAACTTGCATCAATCTTCAGTGATTTGAGAGACAAAAGCACAATCATGGACAAGCCAGCTATTAGAAAGTCATTGGAATCTCTTATGAATGAGCTTGGTCGTGCTAAAACTTTGATCAGAAGCTCCTCTTTGAAAGACCCCGTCAAACGAATTGAGGACATAGCACATGATCTTGGTCGATCACTAGGCATGCTGCTTGTGGCCAGCCATGAAGTGTGCATAGAGTTTAGAGAAAAGATTGGTACATTGCAAAAACAGCTGATGAATGCGAGATTTGGTGGGAATATGAATCTAACTTCAAGTTCAATATCAAGATTTGTCagtgaagtggaagtgagaggggaaatagaagaggaaATAATTAAAGTTACTAGTGATGATGTTCTACTACAGCTTAAGAATGGTGATGCTGGAGAATTGGCAGTTGCACTTTTAAGATTTAAAAAGTTCATCTGGGATGGAAAACTGGATAGTGGTTTAATTAATGTTGAAGCTGTTGTTTTTGTTCTTTTTAATCGTCTGTGTTCATGTAAGGCAGGCAATAGGTTAACCATCATTCAATTGCTAAGAAGTATTGCTTCGGGAAATGATGAGACAAAGGAGAAGATGACAAATGTTGAGTTATTATCAGCAGTGGTGAAGTCCCTAACAAGAGACACCGAAGAGAGGAGGGAAGCAGTGGGACTGTTGTTAGAACTATCTGATCTTCCTGTAGTTAGACGGAAGATTGGAAGAATTCAAGGGTGTATTGTTATGTTAGTTTCTATCCTTAATGGAGTTGACCCTGTTGCTTCAAGAAATGCAGCAAAGTTGTTGGATGTTCTATCGAATAATACTCAAAATGCTCTTCATATGGCTGAGGCTGGTTATTTTGGGCCACTAGTGAAGCATTTGAGTGAAGGTTGTGATATGAACAAGATCCTCATGGCAACAGCACTTTCTAGGCTGGTGCTCACTGATCATAGCAAACTTGCCCTTGGACAAGAAGGGGGGGCAATTGAGCCCCTTGTGAAAATGTTCAATTCCGGGAAACTTGAGTCCAAGTTATCAGCTCTAAATGCACTGCAAAACCTTTCCAGCTTGACAGAAAATGTGCAACGTTTGATCGGAACTGGCATTGTAGGATCTCTGCTGCAACTTCTTTTCTCTGTAACATCTGTGCTCATGACTCTGCGTGAGCCTGCATCAGCTATTCTGGCGAGAATTGCGCAGTCAGAAACAGTTCTTGTTAATCAAGGTGTGGCTCAGCAGATGCTCTCACTTTTGAATCTTTCCAGCCCTGTGGTTCAAGGTCATCTATTAGAAGCTCTAAACAGCATTGCTTCCCATCCTTGCGCTTCAAAAGTGAGAAGAAAAATGAAGAAAAAAGGTGCACTTCAGCTAATTTTACCATTTCTGAAAGATACAGAAATTAAAACAAGGAGCAAGGCGTTGCATTTGCTGTATACTCTCTCTGACGATCTAACAGATGAGTTAACTTCACATTTTGATGAAACTCATCTTTTTGACATTGTTGGCATTGTTTCATCATCAACATCAGATAGTGAAAAGGCTGCTGCTGTTGGCATACTGAGTAATCTTCCTGTTAGTGATAAAAAAGTAACAGATGTACTAAAGAGAGCAAATTTGTTGCCTATTTTGATATCCACTATGAATACAGACACAGGAAGTAACTCACCTACAAAAAGTAGCTTCGTGGAGAGTATTGCTGGCGTTGCAATCCGGTTCACAAATTCTTCTGACAAGAAACTACAAATTTTTTCAGCACAACAAGGGGTGATTCCTTTGCTTGTGGCACTGCTCTCAAGAGGTTCATCAATCACAAAATTCAGAGCTGCAACCGCCCTCGCTCAACTGTCAGAGAATTCTCTCTCTCTGAGGACGTGTAGGAAGTCAAGGTGGCTGTGTGTTGCCCCATCAATAGATGCATATTGTGAAGTTCATGATGGCTATTGCTTTGTGAGAAGCACATTTTGTCTGGTCAAGGCTGGTGCTGTTTCTCCCCTTATCCAAATACTGGAAGATAAGGATTGGGAAGCAGTGGAAGCTGCTTTGAATGCCCTTTCCACTCTATTGCAAGACGAAATCTGGGAAGGTGGTGCCAATTGCATAGCCAAACTGTCAGGTGTACAAGCCATTGTAAACATATTAGAAGTAGGAAATGCAAAGGTTCAAGAAAAAGCACTATGGATGTTGGAGAGAATATTCAGGGTAGAAGAACACAGAACGAAATATGGAGAATTGGCTCAGGTGGTTCTCATTGATCTGGCACAGAGGAGTGATTGTAGATTGAGATCAACAGTTGCAAAAGTTTTGGCAGTGCTGGAGCTCCTACTAGTTCAATCAAGTTATTTCTAA 2637 0.4027 MVLFQRTKKQKGRRRLLKCREIATREEKTQSKTISFVSHPCGRSTVVINMKDKRDLYEFVSELIVMADEVASLAKNPEIEIQDAFTEFALLVEKLASIFSDLRDKSTIMDKPAIRKSLESLMNELGRAKTLIRSSSLKDPVKRIEDIAHDLGRSLGMLLVASHEVCIEFREKIGTLQKQLMNARFGGNMNLTSSSISRFVSEVEVRGEIEEEIIKVTSDDVLLQLKNGDAGELAVALLRFKKFIWDGKLDSGLINVEAVVFVLFNRLCSCKAGNRLTIIQLLRSIASGNDETKEKMTNVELLSAVVKSLTRDTEERREAVGLLLELSDLPVVRRKIGRIQGCIVMLVSILNGVDPVASRNAAKLLDVLSNNTQNALHMAEAGYFGPLVKHLSEGCDMNKILMATALSRLVLTDHSKLALGQEGGAIEPLVKMFNSGKLESKLSALNALQNLSSLTENVQRLIGTGIVGSLLQLLFSVTSVLMTLREPASAILARIAQSETVLVNQGVAQQMLSLLNLSSPVVQGHLLEALNSIASHPCASKVRRKMKKKGALQLILPFLKDTEIKTRSKALHLLYTLSDDLTDELTSHFDETHLFDIVGIVSSSTSDSEKAAAVGILSNLPVSDKKVTDVLKRANLLPILISTMNTDTGSNSPTKSSFVESIAGVAIRFTNSSDKKLQIFSAQQGVIPLLVALLSRGSSITKFRAATALAQLSENSLSLRTCRKSRWLCVAPSIDAYCEVHDGYCFVRSTFCLVKAGAVSPLIQILEDKDWEAVEAALNALSTLLQDEIWEGGANCIAKLSGVQAIVNILEVGNAKVQEKALWMLERIFRVEEHRTKYGELAQVVLIDLAQRSDCRLRSTVAKVLAVLELLLVQSSYF 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00405 878 Gene3D - 743 872 IPR011989 -
Cca04g00405 878 SUPERFAMILY ARM repeat 221 474 IPR016024 -
Cca04g00405 878 Gene3D - 403 726 IPR011989 -
Cca04g00405 878 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 424 466 IPR000225 GO:0005515
Cca04g00405 878 SUPERFAMILY ARM repeat 387 833 IPR016024 -
Cca04g00405 878 SMART arm_5 674 714 IPR000225 GO:0005515
Cca04g00405 878 SMART arm_5 746 786 IPR000225 GO:0005515
Cca04g00405 878 SMART arm_5 289 328 IPR000225 GO:0005515
Cca04g00405 878 SMART arm_5 790 830 IPR000225 GO:0005515
Cca04g00405 878 SMART arm_5 539 579 IPR000225 GO:0005515
Cca04g00405 878 SMART arm_5 371 411 IPR000225 GO:0005515
Cca04g00405 878 SMART arm_5 412 453 IPR000225 GO:0005515
Cca04g00405 878 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 51 878 - -
Cca04g00405 878 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 51 878 - -
Cca04g00405 878 Gene3D - 257 402 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00405 Cca-Chr4 4048928 4053001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00405 270 865 U-box Gene Family AT1G76390 29.734 3.85e-47 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00405 K08332 - gmx:102664566 1292.72