Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00402 ATGAGAAGCAGTGTAGTGTTGTTGTTAGTTACCTGGATATGGTTCCGCGTGGCAGCGTGCTCTTCCTTCACTGACATGGATGCGCTGCTGAAGCTCAAGGACTCCATAAAGGGAGACAAGGCCAAGCAGGAGGCGCTCCAAGATTGGAGGTTCTCCACCTCGCTTTCCGCACACTGTTCCTTTTCAGGTGTAAAATGCGACCACGACCTCCGAGTCGTCGCAATCAACGTCTCCTTCGTTCCTCTCTTCGGCCACCTCCCGCCGGAGATCGGAAAGCTCGACAAACTCCAGAACCTCACCCTCGCGCAGGACAACCTCACCGGAGTGCTCCCCAAGGAGCTCGCCAACCTCACCTCCCTCAAGCTCCTCAACATCTCCCACAACAACTTCTCCGCCCATTTCCCCGCCGGAATCATTCTTCCCATGACCCAACTCCAGGTCCTCGACGTCTACGACAACATGTTCACCGGAGCACTTCCCCAGGAGTTGGTCCGCCTGGAGAACCTCAAGTACCTCAAGCTCGACGGAAACTACTTCACCGGCACCATACCGGAGAGTTACTCAGAGTTCAAGAGCTTAGAGTTTTTAAGCTTAAGCACCAACAGCCTCTCGGGGAAGATTCCCAAGAGTTTGTCCAAATTAAAGACGCTCAAGTATCTCAAACTCGGATACGTCAACGCCTACGAAGGCGGAATCCCGCCGGAGTTCGGAACAATGAAATCTCTGAAATTCCTTGATCTCTCAAGCTGTAACCTCAGCGGCGAGATTCCACCGAGTCTCAGCAATTTGACAAACCTCGACACGTTGTTCCTGCATATCAACAACCTCACCGGAACAATCCCGCCGGAGCTCTCCAACATGGCCAGCCTCATGTCACTGGATCTCTCCATCAACAACCTCACCGGCGAGATTCCGTTGAGTTTCTCCAAGCTCAGAAACCTCACGCTCATGAATTTCTTCCACAACAAGCTCCGCGGTCCTATTCCGTCGTTCGTCGGGGAGCTTCCGCATCTGGAAACGCTTCAGCTCTGGGAGAACAACTTCTCGTACGTGCTCCCGCAGAACCTAGGGGAAAACGGCAAGTTCATCTTCTTCGACGTGATGAAGAACCACCTCACTGGATTAATCCCCAGGAATTTGTGCAAGAGCGGCAAGTTGCAGACGTTCTTGATCAGCGATAACTTCTTCAACGGTCCACTCCCCGAGGAGATTGGTAACTGCAAGTCTCTCATGAAAATCCGCGCCGCCAATAACTACCTTGACGGTAACATTCCCTCTGGGATCTTCAAACTGCCTTCCGTTAACATAATCGAGCTCTACAAGAACCATTTTAACGGCCAACTGCCTTCCGAGATTTCCGCCGTCTCTCTCGGGACGCTCACGCTTTCCAACAACTTCTTCACGGGGAATATCCCGCCAGCCTTCAAAAACTTCCGAGCGTTGCAAGCTCTTGCACTCGACGCCAACCAGTTCGTTGGGGAAATTCCCGGGGAGCTTTTCGAATTACCGCAGTTGACCAAGGTCAACATCAGCGGCAACAATCTAACAGGACCCATCCCAGCGACGTTGACTCGCTGCGCTACGCTCACCGCCGTTGACCTCAGCCGGAACATGCTCGCCGGCGAGATTCCCACGGGGATTAAAAACCTCTCAGACTTGAGCATTTTCAACGTGTCGAGGAACCAAATCACAGGTCCCATCCCGGACGAGATTCGCGTGATGCCGAGCCTCACCACGCTGGATCTCTCCTACAACAGTTTGTACGGCAAGGTTCCCACCGGCGGCCAGTTCCAGGTGTTCAGCGAGAAATCCTTCGCGGGGAACCCTAACCTCTGTTTCTCCCGGTCGTGCCCTAATTCGTGGAGAAAGAGGGGCGGTCCTTGGAGCTCGAAACCGACGAGGGTGATAGTGATAGTAATTGCACTGGCGACCGCGACGCTGGTGGTGTTGGTGACGGTGTACGTGGCTCGGCGGAGGAAGGTGCAGCGGGCGATGACGTGGAAGCTGACGACGTTCCAGCGGGTGAGTTTAAAGGCGGAGGAGGTGGTGGAGTGTCTGAAAGAGGAGAACATAATAGGGAAAGGAGGGGCTGGGATCGTGTACCGCGGGTCCATGGCGAACGGTAGTGACGTGGCGATAAAGAAGTTGGTGGGTGCAGGGAGTGGGAGAAACGATTATGGTTTCAAGGCGGAGATAGAGACGGTGGGGAAGATAAGGCACAGGAACATAATGAGGCTTCTGGGTTACGTGTCGAACAAGGAAACGAACCTGTTGCTGTATGAGTACATGCCGAATGGGAGCTTAGGGGAGTGGCTGCATGGAGCCAAGGGGGGGCACTTGAGGTGGGAAATGAGGTACAAGATTGCAGTGGAAGCTGCCAAGGGTCTCTGCTATTTGCACCACGATTGTTCCCCTCTCATCATCCACAGGGACGTCAAGTCCAATAACATATTGCTGGACGCGGAGTTGGAGGCCCATGTTGCTGATTTTGGGCTTGCCAAGTTCTTGTACGACCCAAACGCGTCCCAGTCGATGTCCTCCATCGCTGGCTCCTACGGCTACATTGCTCCAGAGTACGCTTACACGCTGAAAGTGGACGAGAAAAGCGACGTGTACAGCTTCGGAGTGGTGCTGTTGGAGCTGATAATTGGGAGGAAGCCAGTGGGGGAGTTCGGCGATGGAGTGGACATCGTTGGATGGGTCAACAAAACAAGATCCGAACTCTCTCAGCCCTCGGATGCTGCCTTGGTGTTGGCTGTGGTGGACCCGCGCCTCACTGGGTATCCATTGACAAGTGTTATTTACATGTTCAACATAGCTATCATGTGTGTTAAGGAAATGGGCCCCGCTCGCCCCACCATGAGGGAAGTCGTTCATATGCTCACCAATCCTCCTCCCTCCACCACCACCACTCCAAACCTAATTAATCTCTGA 2934 0.5375 MRSSVVLLLVTWIWFRVAACSSFTDMDALLKLKDSIKGDKAKQEALQDWRFSTSLSAHCSFSGVKCDHDLRVVAINVSFVPLFGHLPPEIGKLDKLQNLTLAQDNLTGVLPKELANLTSLKLLNISHNNFSAHFPAGIILPMTQLQVLDVYDNMFTGALPQELVRLENLKYLKLDGNYFTGTIPESYSEFKSLEFLSLSTNSLSGKIPKSLSKLKTLKYLKLGYVNAYEGGIPPEFGTMKSLKFLDLSSCNLSGEIPPSLSNLTNLDTLFLHINNLTGTIPPELSNMASLMSLDLSINNLTGEIPLSFSKLRNLTLMNFFHNKLRGPIPSFVGELPHLETLQLWENNFSYVLPQNLGENGKFIFFDVMKNHLTGLIPRNLCKSGKLQTFLISDNFFNGPLPEEIGNCKSLMKIRAANNYLDGNIPSGIFKLPSVNIIELYKNHFNGQLPSEISAVSLGTLTLSNNFFTGNIPPAFKNFRALQALALDANQFVGEIPGELFELPQLTKVNISGNNLTGPIPATLTRCATLTAVDLSRNMLAGEIPTGIKNLSDLSIFNVSRNQITGPIPDEIRVMPSLTTLDLSYNSLYGKVPTGGQFQVFSEKSFAGNPNLCFSRSCPNSWRKRGGPWSSKPTRVIVIVIALATATLVVLVTVYVARRRKVQRAMTWKLTTFQRVSLKAEEVVECLKEENIIGKGGAGIVYRGSMANGSDVAIKKLVGAGSGRNDYGFKAEIETVGKIRHRNIMRLLGYVSNKETNLLLYEYMPNGSLGEWLHGAKGGHLRWEMRYKIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDAELEAHVADFGLAKFLYDPNASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWVNKTRSELSQPSDAALVLAVVDPRLTGYPLTSVIYMFNIAIMCVKEMGPARPTMREVVHMLTNPPPSTTTTPNLINL 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00402 977 PANTHER UNNAMED PRODUCT 5 968 - -
Cca04g00402 977 SMART serkin_6 686 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00402 977 SMART LRR_typ_2 117 141 IPR003591 -
Cca04g00402 977 SMART LRR_typ_2 142 166 IPR003591 -
Cca04g00402 977 SMART LRR_typ_2 190 214 IPR003591 -
Cca04g00402 977 SMART LRR_typ_2 263 287 IPR003591 -
Cca04g00402 977 SMART LRR_typ_2 335 359 IPR003591 -
Cca04g00402 977 SMART LRR_typ_2 239 262 IPR003591 -
Cca04g00402 977 SMART LRR_typ_2 502 526 IPR003591 -
Cca04g00402 977 SMART LRR_typ_2 574 607 IPR003591 -
Cca04g00402 977 PRINTS Leucine-rich repeat signature 290 303 - -
Cca04g00402 977 PRINTS Leucine-rich repeat signature 574 587 - -
Cca04g00402 977 ProSiteProfiles Protein kinase domain profile. 686 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00402 977 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 5 968 - -
Cca04g00402 977 Gene3D Ribonuclease Inhibitor 24 139 IPR032675 -
Cca04g00402 977 SUPERFAMILY L domain-like 369 613 - -
Cca04g00402 977 Gene3D Ribonuclease Inhibitor 228 331 IPR032675 -
Cca04g00402 977 Gene3D Transferase(Phosphotransferase) domain 1 763 970 - -
Cca04g00402 977 SUPERFAMILY RNI-like 75 420 - -
Cca04g00402 977 Pfam Leucine rich repeat N-terminal domain 25 67 IPR013210 -
Cca04g00402 977 Gene3D Ribonuclease Inhibitor 332 624 IPR032675 -
Cca04g00402 977 Pfam Leucine Rich Repeat 241 263 IPR001611 GO:0005515
Cca04g00402 977 Gene3D Phosphorylase Kinase; domain 1 650 762 - -
Cca04g00402 977 Pfam Protein tyrosine and serine/threonine kinase 687 914 IPR001245 GO:0004672|GO:0006468
Cca04g00402 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Cca04g00402 977 Pfam Leucine rich repeat 168 224 IPR001611 GO:0005515
Cca04g00402 977 Pfam Leucine rich repeat 528 587 IPR001611 GO:0005515
Cca04g00402 977 Gene3D Ribonuclease Inhibitor 140 227 IPR032675 -
Cca04g00402 977 SUPERFAMILY Protein kinase-like (PK-like) 672 961 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00402 Cca-Chr4 4025872 4029358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00402 18 967 Receptor kinase-like Gene Family AT1G75820 61.979 0.0 1211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca04g00402 PK_Tyr_Ser-Thr 2.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00402 K00924 - gmx:732625 1573.14