Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00399 ATGGTTCAGAGAAAGGTTCTAAGCAAGCTTGATATCCAAGCTGATCGTGTCAAATCAGACAAGTCCTTAGCAAACCTAAAGCCATCTTCTCATCACCAAGATGGCACCGCCAGAGGAACCAATAAGATGAAGAAAATGATGAAGCCAAGGTCAATTCAGCTTTCTTATTTGGAGCCTCCTCAATCAAGAAAGCCACCACCTCTTCATGTTTCAACTATTGCAGCATCACCACAACAGCACAAGCATTTGATGAGAAGGTCACCTAACTACATGAAGCCTACCAGCAGTTCAGATGCCAAAAAGGAGCTTTTGCCTGTTAGTCACAGAAATACTCGATCTAGTTCAGATGATGTGAATGCACCAGAGAGGGCTACCTGCTCTTCAACTTTGAAAGACTATAAGTTCCCTGAGTACCTCATGCTTCATCCCGGGGCAACCGAATCTGAGGGAGCTTCTGTCATGAAGGTTTGCCCGTATTCATATTGTTCTCTTAATGACCATGGTCATGCTCCTTTGCCTCCTTTGAAGAGCTTCATGTCAGCAAGGAGACATCTTTTGGAGACTCAACGATGGAAGATGCTCCCCTCTGATACACAAAAAGACTCTGATATTCATGGAAAACCTGCATGTGATGAAACTGATACGGGTAATACAACAATCACTCCATTGGCACAAGAAATTGGTATGGATTTCTTTTTTGAAATCTATGCTAAGGAGAGGGAAGGAGCTCATGAAATGGGAAAATTCAACTCTGTCAAAGATCTTGAGGAACAAGATATCGATTCTGCAAATGAGGAGAATGGCATTGCAGCAGAAGAGGGTGCCATCAAGCAAGTTACTCCAGTTGAAGCAGACAGCAAGGGGAGCTTTCAAAATGCTGAAGATGCAAATGAAAACCACCCACATAGCTGGTTTCACGAAGAAACCTGTACGGGAAGCTATTCCAATGATGCTAGCTATGATGAGGAACACCACGAGAATATTGAATTGGTTGAGTCCAAATCCCAATATAGTGATATGGATTGGGAGGAGGAATACTTCTGTGAATTCAACTATGAAGACGGTACTGATTCTTCAATCTGCTCTATGGAGGAGACTGACCCAAAACTTGAGTCTTTATCAGAGGGTTCACATGATATATCTGAAATGTTGTTAGTTGACATCTTTAGCAACCATTATTCAGACATTCTGGTTGAAGAGGTGAGTCTCCAAGAAGCCGAAGAAGAGAAAAGCACCAGTTTTGAAGCACAACCTCATTGCACTAATTCTGTCATGGTAGGCACAGGTGAAAGCATCGATTTTGTGACTCAAGAAATAGATTATCCGTCCAATGGTATAAGTTTTGAGTATGAACAATCTACTTTGACAAAGGAAGTATTTCAGTATCTGACAAACGCAGAAGATAGCAACAACAGAGAAAATGAAAAACAAGTGAATTATGAGGTCGGTTATGTCTCTATGGTACTCGATGAAGAGACAGTTGAAAACAGTGAAGGCCACAAGACTAGTGAAAGTTGCGAGATTGATAAGAGTTGTGAAGACAAGAGTGCAAGCGTAGAGAATAATGATGATGGCATAATTCACTCGTCTGATGTGCCTGAAGAAAGTACCATTATTGTTCAGAAGCAGAAATTATGGGAGAAAAATCATGTTAGAGGCAGTAGTAAGTTGCAGAGCACAGGTGGTGAAGAGCAGCACATGAGCAAGAATTGGCAATGGGGAACTAAGCGCAAAAGATTGGTCGAAGAGGACGAGGAAATGGGAAAGATCAACCCAAGAAAACCAAATTTCCTGACCTCGGTTGCTGAGCCAGAACCAGAGAAAGTTGAACTGAAGCACCAAATGATAGATGAAAGAAAAAATGCAGAGGAATGGATGCTTGATTTTGCACTAAGACAAACTGTCACGAGACTGGCTCCAGCAGGGAAAAGGAAGCCTTTGCTCGTGCAAGACCTATTCAAGCGTGTAGCTGATGTATGCATAATGCATGCAACTAAGGGTCGTATGGCTTTTACATGGAAACTGAAACACAAGAATGGGATGAGATTTGTTGCCAAAATTTGTTCAGAGTGCTTTCGTGTTTACTTTCTTTTAGTTGTATTTGATGTACTAGAACTTTAG 2121 0.4168 MVQRKVLSKLDIQADRVKSDKSLANLKPSSHHQDGTARGTNKMKKMMKPRSIQLSYLEPPQSRKPPPLHVSTIAASPQQHKHLMRRSPNYMKPTSSSDAKKELLPVSHRNTRSSSDDVNAPERATCSSTLKDYKFPEYLMLHPGATESEGASVMKVCPYSYCSLNDHGHAPLPPLKSFMSARRHLLETQRWKMLPSDTQKDSDIHGKPACDETDTGNTTITPLAQEIGMDFFFEIYAKEREGAHEMGKFNSVKDLEEQDIDSANEENGIAAEEGAIKQVTPVEADSKGSFQNAEDANENHPHSWFHEETCTGSYSNDASYDEEHHENIELVESKSQYSDMDWEEEYFCEFNYEDGTDSSICSMEETDPKLESLSEGSHDISEMLLVDIFSNHYSDILVEEVSLQEAEEEKSTSFEAQPHCTNSVMVGTGESIDFVTQEIDYPSNGISFEYEQSTLTKEVFQYLTNAEDSNNRENEKQVNYEVGYVSMVLDEETVENSEGHKTSESCEIDKSCEDKSASVENNDDGIIHSSDVPEESTIIVQKQKLWEKNHVRGSSKLQSTGGEEQHMSKNWQWGTKRKRLVEEDEEMGKINPRKPNFLTSVAEPEPEKVELKHQMIDERKNAEEWMLDFALRQTVTRLAPAGKRKPLLVQDLFKRVADVCIMHATKGRMAFTWKLKHKNGMRFVAKICSECFRVYFLLVVFDVLEL 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00399 706 MobiDBLite consensus disorder prediction 495 529 - -
Cca04g00399 706 Pfam Plant calmodulin-binding domain 574 645 IPR012417 GO:0005516
Cca04g00399 706 PANTHER PLANT CALMODULIN-BINDING-LIKE PROTEIN 1 116 - -
Cca04g00399 706 MobiDBLite consensus disorder prediction 553 574 - -
Cca04g00399 706 MobiDBLite consensus disorder prediction 553 569 - -
Cca04g00399 706 MobiDBLite consensus disorder prediction 108 123 - -
Cca04g00399 706 MobiDBLite consensus disorder prediction 196 210 - -
Cca04g00399 706 MobiDBLite consensus disorder prediction 196 217 - -
Cca04g00399 706 MobiDBLite consensus disorder prediction 495 521 - -
Cca04g00399 706 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 1 116 IPR044681 GO:0005516
Cca04g00399 706 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 116 282 IPR044681 GO:0005516
Cca04g00399 706 PANTHER PLANT CALMODULIN-BINDING-LIKE PROTEIN 116 282 - -
Cca04g00399 706 PANTHER PLANT CALMODULIN-BINDING-LIKE PROTEIN 282 658 - -
Cca04g00399 706 MobiDBLite consensus disorder prediction 15 123 - -
Cca04g00399 706 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 282 658 IPR044681 GO:0005516
Cca04g00399 706 SMART CaM_binding_2 547 658 IPR012417 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00399 Cca-Chr4 4004346 4006930 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00399 563 656 Calmodulin-binding Proteins AT2G38800 46.809 2.99e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00399 - - ccaj:109798360 1234.94