Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00395 atgggagaggtagcgcgTGGAGGTTGTTGCCCTCCGATGGATCTGTTCCGTTCGGAGCCGATGCAACTTGTTCAACTCATCATTCCCATCGAATCCGCTCACCGCACTGTCTCCTACCTCGGCGACCTTGCGCTCCTTCAGTTCAAAGATCTCAATGCAGACAAGAGTCCTTTTCAACGGACCTATGCAACTCAGATAAAAAGATGTGGAGAGATGGCTCGTAGATTACGTTTTTTCAAGGAGCAAATGTTGAGGGCTGGTGTTTTACCAAAATATTCTACAACACCAATTGGTGTGAACATTGATGACCTTGAGGTAAAACTTACAGAAATTGAGTCTGAGTTAACTGAGATGAATGCAAATGGTGAAAAGTTGCAACGGTCACACAATGAGCTTGTGGAGTATAAGCTTGTTCTGCAGAAGGCTGGTGAGTTTTTCCACACAGCTCAAAGCCGTGCCTTAGAGCAGCAGAGAGAATATGAATCACGTCAGCTGAGTGGTGAATCTATGGAAACACCTTTATTACAGGACCAAGAATTGTTAGGTGATACAAAGCAAGTGAAGTTGGGTTTTTTAGCAGGTCTTGTACCCAGGGAAAAGTCCATGGTGTTCGAGAGAATTTTATTTCGTGCTACTAGAGGAAATGTATTTTTGAGGCAGGCTACTGTCGAGGAGCCTGTCATAGACCCTGTTTCTGGAGACAAGACGGAGAAAAATGTTTTTGTGGTCTTCTATGCTGGTGAAAAAGCAAAAGCCAAGATTCTGAAAATATGTGATGCCTTTGGTGCTAATCGTTACCCTTTTGCTGAGGAACTTGGAAAACAAGCTCAAATGATTAGAGAGGTTTCTGGAAGACTTGTAGAATTGAAGACCACTATAGATGCTGGATTAGTGCACCGGGATAATTTGCTAAATTCTATTGGGGCTCAATTTGAGCAGTGGGATGCTTTGGTGAGAAAGGAGAAATCTATTAATCATACCCTGAACATGCTAAGCCTTGATGTGACGAAAAAATGTCTTGTGGCTGAGGGGTGGAGTCCTGTTTTTGCAACTAAACAGATCCAGGATGCATTACAGCGGGCAGCATTGGACTCTAATTCTCAAGTCAATGCCATTTTCCAAGTTTTGCATACCAGGGAGTTGCCACCTACCTATTTCCGTACAAACAAATTTACTTCTTCATATCAAGGAATTATTGACTCATATGGGGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATACTGTAGTTACCTTTCCATTTCTTTTTGCTGTAATGTTTGGCGATTGGGGGCATGGAATATGTTTACTACTGGCAGCTCTATATTTCATAATCAGGGAGAAGAAACTTTCTAGCCAGAAGCTTGATGACATCACGGAGATGACTTTTGGAGGTCGTTATGTTATTTTGTTGATGGCGTTATTCTCAATCTACACTGGCTTTATCTATAATGAGTTCTTTTCTGTACCGTTCGAAATCTTTGGTCCCTCTGCATATGAATGTCGCGACCTTTCTTGCAGGGATGCTACAACAGTGGGCCTGATAAAAGTGCGTGACACTTACCCTTTTGGAGTGGATCCTGTCTGGCATGGCACCCGAAGTGAACTACCATTCCTAAACTCATTGAAAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTATAATGAGCTATTTCAATGCCAAATTCTTTAGAAACTGTGTAAATGTGTGGTTCCAGTTCATTCCCCAGATGATATTTCTCAACAGTCTATTTGGCTACCTATCCCTTCTTATCATTGTCAAGTGGTGCACTGGTTCTCAAGCTGATTTGTACCATATTTTGATCTACATGTTCCTGAGCCCCACAGATGATTTGGGTGAGAACCAGCTCTTTGTTGGTCAGAAAAATTTGCAGCTTGTGCTTTTGCTTCTGGCCTTTGTCTCTGTGCCCTGGATGCTAATTCCAAAACCTTTTATCTTGAAGAAGCAACATGAAGCTAGGCACGGGGTTGAATCCTACACACCACTTGAAAACACAGATGAGAGCTTGCAAGTGGAGTCAAACCATGATTCCCATGGTCATGAGGAATTTGAGTTCAGTGAAGTCTTTGTGCATCAACTCATACATACCATAGAATTTGTACTTGGAGCAGTCTCTAATACAGCTTCTTACCTCCGACTATGGGCCCTTAGTCTTGCTCATTCAGAGTTATCAAGTGTCTTCTACGAGAAGGTTCTGATGATGGCATGGGGGTACAATAATGTGATTATCCTGATAGTGGGTCTCATCGTCTTCATTTTTGCTACCGTTGGAGTGTTACTTGTCATGGAAACTCTGAGTGCGTTCTTGCATGCGTTACGTCTTCACTGGGTGGAGTTTCAAAACAAGTTTTACGAGGGCGATGGTTACAAGTTCCACCCTTTCTCGTTCTCATTGCAGGATGACGAGGAATGA 2454 0.4214 MGEVARGGCCPPMDLFRSEPMQLVQLIIPIESAHRTVSYLGDLALLQFKDLNADKSPFQRTYATQIKRCGEMARRLRFFKEQMLRAGVLPKYSTTPIGVNIDDLEVKLTEIESELTEMNANGEKLQRSHNELVEYKLVLQKAGEFFHTAQSRALEQQREYESRQLSGESMETPLLQDQELLGDTKQVKLGFLAGLVPREKSMVFERILFRATRGNVFLRQATVEEPVIDPVSGDKTEKNVFVVFYAGEKAKAKILKICDAFGANRYPFAEELGKQAQMIREVSGRLVELKTTIDAGLVHRDNLLNSIGAQFEQWDALVRKEKSINHTLNMLSLDVTKKCLVAEGWSPVFATKQIQDALQRAALDSNSQVNAIFQVLHTRELPPTYFRTNKFTSSYQGIIDSYGVAKYQEANPTVYTVVTFPFLFAVMFGDWGHGICLLLAALYFIIREKKLSSQKLDDITEMTFGGRYVILLMALFSIYTGFIYNEFFSVPFEIFGPSAYECRDLSCRDATTVGLIKVRDTYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIMSYFNAKFFRNCVNVWFQFIPQMIFLNSLFGYLSLLIIVKWCTGSQADLYHILIYMFLSPTDDLGENQLFVGQKNLQLVLLLLAFVSVPWMLIPKPFILKKQHEARHGVESYTPLENTDESLQVESNHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLMMAWGYNNVIILIVGLIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFHPFSFSLQDDEE 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00395 817 PIRSF ATP6V0A1 11 817 IPR026028 GO:0000220|GO:0046961
Cca04g00395 817 Pfam V-type ATPase 116kDa subunit family 39 810 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cca04g00395 817 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 5 817 - -
Cca04g00395 817 Coils Coil 101 128 - -
Cca04g00395 817 PANTHER VACUOLAR PROTON ATPASES 5 817 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00395 Cca-Chr4 3984371 3995243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00395 13 817 Primary Pumps ATPases(2) AT4G39080 77.571 0.0 1304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00395 K02154 - gmx:100810062 1498.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00395 04 3984371 3995243 Cca04g00395 04 3984371 3995243 ECH