Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca04g00394 | ATGGCTTCCGATTCTTCTCCTCCCAATTTCAACAACGGTCCTTCATCTCCCGACGACTCTCTCTCCAGCCCCATCGCTAACACGTTCTCCTCGCCGGCCTCCAGGCGCCGCCGCCGCCCCCCGACCACTCCCTCCGCCGCGTTCGGGACCCCATCGGAGCGCCGCTCCCGCTTTGCCGCCTCCGATGCCACCCCGACGCCGCGATCCCGCCAGCGCGGCGGCGCCGGGCGCGTTCCCGCCACGCCGACTTCCACCACCGACGACGTGCCGGCCTCTTCCGAAGGCGGCGACGGCTACGACATGGACGACGCCAGGCCCACCTTCGTGTGGGGCACCAACATAAGCGTGGAGGACGTGAACGACGCCATTCAGAGGTTTCTGAGGGACTTCAGAGAACCTTCTGAGGGCGACGATGAAGGTTTGCATTTGCACACTGAGGGGAAGTATGAGAAATTGATCGTGCAGGTTATTGAAGTTGAAGGAGACTCTCTTGATGTTGATGCTCACGACGTGTTTGATCATGACCCTGATTTGTATACCAAGATGGTTAGGTACCCTCTTGAGGTGCTCGCGATTTTTGACTTGGTTTTGATGAATATGGTTAGCCGGTTGAAACCCATGTTTGAGAAGCACATACAGACGCGGATTTTCAATCTCAAAACCTCAACCTCGATGAGAAATTTGAACCCTTCTGACATTGAGAGGATGATATCGTTGAAGGGAATGATTATAAGAAGCAGCTCAATCATACCGGAAATTAGAGAAGCTACATTTAGGTGTCTTGTGTGTGGTTTCTGTTCTGATCCAGTTACTGTGGAGAGAGGGCGAATAACTGAACCTACTATATGCGCGAGGGAAGAATGTCAATCCAGGAACTCCATGGCACTCGTTCACAACCGATGCAAGTTTACTGATAAGCAAATTGTGAGGATCCAGGAGACACCCGATGAGATACCTGAAGGAGGAACACCTCACACAGTTAGTTTGCTGATGCATGACAAGCTTGTGGACACTGGAAAGCCAGGTGACAGAGTTGAGGTTACTGGCATTTATAGGGCCATGAGTGTTAGGGTTGGACCAACTCAGAGAACTGTTAAGTCATTGTTCAAGACATATATTGATTGTCTTCACATAAAGAAGACTGATAAGTCTAGGATGCTGGTAGAGGATGCTATGGATGTTGATGAACCAGGCAAAAATTCAGAGCAAGTTCTCTTTAATGAAGAGAGGGTGGCTCAACTGAAGGAGCTCTCAAAAAAGCCGGATATATATGAAATACTGACAAGATCATTGGCGCCAAACATATGGGAGCTAGACGATGTGAAGAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCTTTGAAGTTAGCTTCTGGTGCTAGCTTCCGTGGTGATATAAATATTCTTCTTGTTGGTGATCCTGGGACAAGCAAGTCCCAGCTACTTCAGTACATACACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGGAGCTCTGCTGTTGGATTGACTGCTTACGTAACCAAGGACCCTGAAACAGGGGAAACTGTTCTAGAGAGTGGTGCCCTAGTTTTGAGTGACCGAGGTATCTGTTGTATTGACGAATTTGACAAAATGTCTGATAATGCGAGGAGCATGTTACACGAGGTCATGGAACAACAAACTGTTTCAATAGCAAAGGCAGGTATTATTGCTTCCCTCAATGCTAGGACTTCGGTTTTGGCTTGTGCAAATCCAAGTGGGTCTAGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACACTTTTGTCCAGGTTTGATTTAATATACCTGCTTCTTGACAAGGCTGATGAACAAACAGACAGGCGACTTGCCAAACATATTGTGTCCTTACACTTTGAGGACCCCGAGAACATGGAGCAGGACGTGTTGGACCTTTCTACATTAACTGATTATGTTAGCTATGCCCGAAAGCACATAAACCCACAGCTTTCTGACGAAGCCGCCGAAGAATTGACTAGGGGTTATGTGGAAATAAGAAAAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCAACGCCAAGGCAGATTGAGAGTCTGATACGCCTAAGTGAAGCATTAGCTCGGATTCGCTTCTCTGAAAAGGTTGAAAAGCGTGATGTAATGGAGGCATTTCGGCTTTTGGAAGTTGCAATGCAGCAGTCTGCAACAGATCACGCTACTGGAACTATTGACATGGATCTTATTACTACTGGAGTTTCGGCTAGTGAAAGGATGAGACGAGAAAGTCTGCAACAAGCAACCCGCAACTTAATCATGGACAAGATGCAGATTGGGGGACCTTCTATGCGGTTATTGGAGTTATTGGAAGAATTGAAGAAACAGGACACTGGTAGTGAGATTCATCTTACTGATCTAAGGAATGCAATTGCTACTCTCGCTACCGAAGGATTTGTTACCATGCATGGTGACAACGTAAAAAGATCGTGA | 2502 | 0.4752 | MASDSSPPNFNNGPSSPDDSLSSPIANTFSSPASRRRRRPPTTPSAAFGTPSERRSRFAASDATPTPRSRQRGGAGRVPATPTSTTDDVPASSEGGDGYDMDDARPTFVWGTNISVEDVNDAIQRFLRDFREPSEGDDEGLHLHTEGKYEKLIVQVIEVEGDSLDVDAHDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSRLKPMFEKHIQTRIFNLKTSTSMRNLNPSDIERMISLKGMIIRSSSIIPEIREATFRCLVCGFCSDPVTVERGRITEPTICAREECQSRNSMALVHNRCKFTDKQIVRIQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMLVEDAMDVDEPGKNSEQVLFNEERVAQLKELSKKPDIYEILTRSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLLLDKADEQTDRRLAKHIVSLHFEDPENMEQDVLDLSTLTDYVSYARKHINPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEKVEKRDVMEAFRLLEVAMQQSATDHATGTIDMDLITTGVSASERMRRESLQQATRNLIMDKMQIGGPSMRLLELLEELKKQDTGSEIHLTDLRNAIATLATEGFVTMHGDNVKRS | 833 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca04g00394 | 833 | Gene3D | - | 407 | 741 | IPR027417 | - | |
| Cca04g00394 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 464 | 479 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca04g00394 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 524 | 538 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca04g00394 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 552 | 565 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca04g00394 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 576 | 588 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca04g00394 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 603 | 611 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca04g00394 | 833 | Pfam | MCM N-terminal domain | 122 | 223 | IPR027925 | - | |
| Cca04g00394 | 833 | ProSitePatterns | MCM family signature. | 532 | 540 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Cca04g00394 | 833 | ProSiteProfiles | MCM family domain profile. | 423 | 629 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca04g00394 | 833 | Pfam | MCM OB domain | 225 | 354 | IPR033762 | - | |
| Cca04g00394 | 833 | Gene3D | - | 742 | 831 | IPR036388 | - | |
| Cca04g00394 | 833 | Gene3D | - | 113 | 219 | - | - | |
| Cca04g00394 | 833 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
| Cca04g00394 | 833 | SMART | AAA_5 | 465 | 615 | IPR003593 | - | |
| Cca04g00394 | 833 | SMART | mcm | 221 | 737 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca04g00394 | 833 | Pfam | MCM P-loop domain | 411 | 633 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca04g00394 | 833 | SUPERFAMILY | Nucleic acid-binding proteins | 144 | 375 | IPR012340 | - | |
| Cca04g00394 | 833 | Gene3D | - | 252 | 304 | - | - | |
| Cca04g00394 | 833 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 77 | 832 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cca04g00394 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 247 | 260 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cca04g00394 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 298 | 310 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cca04g00394 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 439 | 450 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cca04g00394 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 585 | 602 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cca04g00394 | 833 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 737 | 746 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cca04g00394 | 833 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 434 | 750 | IPR027417 | - | |
| Cca04g00394 | 833 | Pfam | MCM AAA-lid domain | 649 | 735 | IPR041562 | - | |
| Cca04g00394 | 833 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM4 | 77 | 832 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cca04g00394 | 833 | MobiDBLite | consensus disorder prediction | 1 | 103 | - | - | |
| Cca04g00394 | 833 | Gene3D | - | 225 | 364 | IPR012340 | - | |
| Cca04g00394 | 833 | CDD | MCM4 | 426 | 735 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca04g00394 | Cca-Chr4 | 3973924 | 3978859 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca04g00394 | 1 | 832 | Core DNA Replication Machinery Family | AT2G16440 | 72.770 | 0.0 | 1233 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca04g00394 | K02212 | - | gmx:100782586 | 1457.2 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca04g00394 | 04 | 3973924 | 3978859 | Cca04g00394 | 04 | 3973924 | 3978859 | ECH |