Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g00389 | ATGAAGATCCAGTGTGATGTGTGTCAAAATGAAGTGGCTTCGTTGTTCTGTCCCGCAGATGAAGCATGTCTATGCCATGCTTGTGATCGCACCATCCACCATGCCAACAAGCTCGCACACCAACACAAACGCTTCTCTCTTCACCATTCCAACTCCAAAGACACCCCTCTTTGTGATATCTGTCATGAGAGGCATGCATATGTTTTCTGCAAAGAGGACAGAGCAATACTTTGTAGAGAATGTGACCTTTCTGTTCATTTGGTCAACGAACACACCAAGAAGCACGACAGGTTTCTTCTCACTGGCGTAAAGATCGGTGCAGCTTCTTCAGAACCGACATCGTTTCCCTCGAATGTGACTGCCACTGGAGAAAGAACAACCTCTTGTTCTAATATGAACGCACCAAGTTCATGCTCAAATGGAAAAATCGGTTCTTCTCGCATGGTTGGAGACAACTTGGCTTGTGACACGGGTTCGGTTTCAACAAGCAGCATTTCTGAGTACTTGATTGAGACCATTCCCGGTTATTGCATGGAAGATCTTCTAGATGCTTCATTTGCATCTAATGCTTTCTCTAAGGATTATGATCACCAATCAGCGTTTGAGAGACAAGATGTTCAAGCAGGCATGTGTTCGTTCCCACTGCAAACGTGGGCACCACAATCCCAACTCAGCACTCATTCGAATCTTCATCCAAGAATTGATTCTTTAGTTGGAGCTATGGAAATGCCTAAAGCCAAAGCCAGTGAAGGATACTCCAATTGGGTATATAACAATGACTACGCTGTCTACAAAGTTCCTTCAATCAGTCCTCAATTGATAAAAAAATGCAGACGCTCTCGTTAA | 846 | 0.4409 | MKIQCDVCQNEVASLFCPADEACLCHACDRTIHHANKLAHQHKRFSLHHSNSKDTPLCDICHERHAYVFCKEDRAILCRECDLSVHLVNEHTKKHDRFLLTGVKIGAASSEPTSFPSNVTATGERTTSCSNMNAPSSCSNGKIGSSRMVGDNLACDTGSVSTSSISEYLIETIPGYCMEDLLDASFASNAFSKDYDHQSAFERQDVQAGMCSFPLQTWAPQSQLSTHSNLHPRIDSLVGAMEMPKAKASEGYSNWVYNNDYAVYKVPSISPQLIKKCRRSR | 281 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g00389 | 281 | ProSiteProfiles | Zinc finger B-box type profile. | 53 | 100 | IPR000315 | GO:0008270 | |
Cca04g00389 | 281 | Pfam | B-box zinc finger | 56 | 92 | IPR000315 | GO:0008270 | |
Cca04g00389 | 281 | Pfam | B-box zinc finger | 4 | 43 | IPR000315 | GO:0008270 | |
Cca04g00389 | 281 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Cca04g00389 | 281 | CDD | Bbox1_BBX-like | 57 | 100 | - | - | |
Cca04g00389 | 281 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 202 | - | - | |
Cca04g00389 | 281 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Cca04g00389 | 281 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Cca04g00389 | 281 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270 | |
Cca04g00389 | 281 | PANTHER | B-BOX ZINC FINGER PROTEIN 20 | 1 | 202 | - | - | |
Cca04g00389 | 281 | Gene3D | Classic Zinc Finger | 1 | 99 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g00389 | Cca-Chr4 | 3935994 | 3937841 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g00389 | 1 | 196 | C2C2-CO-like Transcription Factor Family | AT1G75540 | 48.571 | 4.26e-58 | 187 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | DBB | Cca04g00389 | zf-B_box | 6.2e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g00389 | - | - | ccaj:109818394 | 589.341 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca04g00389 | 04 | 3935994 | 3937841 | Cca04g00389 | 04 | 3935994 | 3937841 | ECH | |
Cca04g00389 | 04 | 3935994 | 3937841 | Cca06g01286 | 06 | 27540532 | 27543928 | ECH |