Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00389 ATGAAGATCCAGTGTGATGTGTGTCAAAATGAAGTGGCTTCGTTGTTCTGTCCCGCAGATGAAGCATGTCTATGCCATGCTTGTGATCGCACCATCCACCATGCCAACAAGCTCGCACACCAACACAAACGCTTCTCTCTTCACCATTCCAACTCCAAAGACACCCCTCTTTGTGATATCTGTCATGAGAGGCATGCATATGTTTTCTGCAAAGAGGACAGAGCAATACTTTGTAGAGAATGTGACCTTTCTGTTCATTTGGTCAACGAACACACCAAGAAGCACGACAGGTTTCTTCTCACTGGCGTAAAGATCGGTGCAGCTTCTTCAGAACCGACATCGTTTCCCTCGAATGTGACTGCCACTGGAGAAAGAACAACCTCTTGTTCTAATATGAACGCACCAAGTTCATGCTCAAATGGAAAAATCGGTTCTTCTCGCATGGTTGGAGACAACTTGGCTTGTGACACGGGTTCGGTTTCAACAAGCAGCATTTCTGAGTACTTGATTGAGACCATTCCCGGTTATTGCATGGAAGATCTTCTAGATGCTTCATTTGCATCTAATGCTTTCTCTAAGGATTATGATCACCAATCAGCGTTTGAGAGACAAGATGTTCAAGCAGGCATGTGTTCGTTCCCACTGCAAACGTGGGCACCACAATCCCAACTCAGCACTCATTCGAATCTTCATCCAAGAATTGATTCTTTAGTTGGAGCTATGGAAATGCCTAAAGCCAAAGCCAGTGAAGGATACTCCAATTGGGTATATAACAATGACTACGCTGTCTACAAAGTTCCTTCAATCAGTCCTCAATTGATAAAAAAATGCAGACGCTCTCGTTAA 846 0.4409 MKIQCDVCQNEVASLFCPADEACLCHACDRTIHHANKLAHQHKRFSLHHSNSKDTPLCDICHERHAYVFCKEDRAILCRECDLSVHLVNEHTKKHDRFLLTGVKIGAASSEPTSFPSNVTATGERTTSCSNMNAPSSCSNGKIGSSRMVGDNLACDTGSVSTSSISEYLIETIPGYCMEDLLDASFASNAFSKDYDHQSAFERQDVQAGMCSFPLQTWAPQSQLSTHSNLHPRIDSLVGAMEMPKAKASEGYSNWVYNNDYAVYKVPSISPQLIKKCRRSR 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00389 281 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Cca04g00389 281 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Cca04g00389 281 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Cca04g00389 281 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cca04g00389 281 CDD Bbox1_BBX-like 57 100 - -
Cca04g00389 281 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 202 - -
Cca04g00389 281 CDD Bbox1_BBX-like 5 47 - -
Cca04g00389 281 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cca04g00389 281 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cca04g00389 281 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 202 - -
Cca04g00389 281 Gene3D Classic Zinc Finger 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00389 Cca-Chr4 3935994 3937841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00389 1 196 C2C2-CO-like Transcription Factor Family AT1G75540 48.571 4.26e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Cca04g00389 zf-B_box 6.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00389 - - ccaj:109818394 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00389 04 3935994 3937841 Cca04g00389 04 3935994 3937841 ECH
Cca04g00389 04 3935994 3937841 Cca06g01286 06 27540532 27543928 ECH