Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca04g00379 | ATGGCTCTTGCTTGGAATTTGGCCATCACTTTGATACTTCTTGTTCTGCTACAATCTTGTTTCCTTGTCACCTTTGCCTCAAGCAATGTCCATATTGTGTATATGGGTAACAGAAGCATTGATCAGAGTGAGCAACAGTCAGTTGAAGACTCTCACCTTGACATACTATCACGTATTCTCGGAAGCAAAAAAGTTGCCAGGAAGTCAATCCTGTATAGCTATAAGCACGGCTTTTCTGGATTCGCTGCAGTTTTAAGTCAGTCTCAAGCTAAGCTCATTGCAGATTTCCCAGGGGTTGTCCGTGTGATTCCAAATAAAATACTTAGTCTTCACACAACAAGAAGCTGGGACTTCTTGCACCTAAAGGAAGATATAGTGACCGGTGCTCTTTATAGGGGTCAATCTGGAAGAGGCACCATCATTGGCATCATGGACACTGGTATTTGGCCTGAGTCTGAGAGCTTTAGAGATGAGCACATGGATAATCCTCCTCTTCACTGGCGTGGTATATGCCAAGGAGGAGAAAACTTTGACAGCTCCCACTGTAATAGGAAAATTATTGGTGCACGTTGGTATATTAAAGGATATGAAGCTGAAATTGGTAAACTAAACACAAGCGATGGGGTAGAGTACTTATCTTCTAGAGATGCATCAGGCCATGGCACTCACACGTCATCTACTGCAGCTGGCGTTGCAGTAGAAAATGCAAGTTTTATGGGACTAGCTAAAGGAATGGCAAGAGGTGGTGCTCCATCAGCCTGGTTAGCTATCTACAAAATTTGTTGGTCTACTGGGGGATGTAGTTCTGCTGACCTTCTTGCAGCATTTGATGATGCGATATTTGATGGGGTTCACGTCCTTTCAGCATCACTTGGCTCAGATCCTCCACTTCCTTCTTATGTTGAGGATGCACTGGCCATTGGTTCTTTCCATGCAGTGGCTAAAGGTATTTCTGTGGTATGCTCTGGTGGCAATTCTGGCCCATATCCCCAAACTGTCATAAACACTGCCCCTTGGGTTATTACCGTTGCTGCCAGTACTATAGACAGAGAATTTCCTTCTATGATTACAATGGGAAACAATCGAACTCTACAGGGTCAGAGTTTATATACAGGGAAAGATTTGAGCAAGTTTTATCCTATTGTATATGGAGAAGACATAGCAGTTTCGGATGCAGACCAAGAAAGCGCAAGGAGCTGCAGTCCAGGGAGCTTGAATGCCACCTTAGCAAAAGGAAAAGCAATTCTATGTTTCCAGTCTAGGTCACAGAGGTCAGCCACAGTTGCTATAAGAACTGTAACAGAAGTTAAGGGCGCTGGCCTCATATTTGCTCAGTTTCCTACTAAAGACGTTGATACATCATGGACTAAACCTTGTGTCCAAGTTGACTATATTACGGGAACAACTATCCTATCTTACATAGAAGCAACGAGGAATCCTGTAATTAAGTTTAGCAAAACAAAAACAGTTGTGGGGCAACAGATATCACCTGAAGTGGCATTCTTCTCTTCGCGAGGACCAAGTTCTCTGTCTCCTTCAGTGTTGAAGCCTGATATCGGTGCTCCTGGGGTTAATATTCTGGCGGCATGGTCACCTGCTTCTTCTGCTGGTTTGCTATCAGAAGCAAATGAAGATGAGTCACGTCCCCTTAACTTCAACATTGAATCAGGAACTTCCATGGCATGTCCCCACATATCTGCTATTGTTGCACTTGTAAAGGCTATTCACCCAACTTGGAGTTGGAGCCCTGCAGCAATTAAGTCTGCTCTTGTCACAACAGCCTCTCTTCAAAATGAATACAATCAATATATTTGGGCAGAGGGAGCACCGCACAAACAAGCTGACCCATTTGACTATGGTGGTGGTCATGTTGATCCTAACAAAGTGGCAGATCCTGGTCTCATATATGACTTGAAAAACTCAGACTATGTTCATTTCCTCTGTTCTATGGGCTACAACAACACTGCCATAAGCTTATTGACAGGGTTTCGTACCAAATGCCATGAATCACCCAAGTTCCTATTAAATATGAACCTACCTTCTATTACTATTCCCGAGCTGAAGCAACCCCTCACGGTTTCAAGAACAGTCACTAATGTTGGCCCAATTAAATCTATCTACAATGCTCGTGTTGTAGCCCCAATTGGTGTATCAGTTGTAGTTGAGCCATCAACCTTAACATTTAGTTCTACACGAAAGAAAATGAAATTTAAGGTAACTTTTTCTTCGAAGCTAAGAGTTCAAAGCAGATTCTCATTTGGGTACCTGTTTTGGGAAGATGGGTTACATAAAGTAAGGATACCACTGGCAGTACGTTCTGTAGTGGATGAATTTTGTGCACAAACATAA | 2349 | 0.43 | MALAWNLAITLILLVLLQSCFLVTFASSNVHIVYMGNRSIDQSEQQSVEDSHLDILSRILGSKKVARKSILYSYKHGFSGFAAVLSQSQAKLIADFPGVVRVIPNKILSLHTTRSWDFLHLKEDIVTGALYRGQSGRGTIIGIMDTGIWPESESFRDEHMDNPPLHWRGICQGGENFDSSHCNRKIIGARWYIKGYEAEIGKLNTSDGVEYLSSRDASGHGTHTSSTAAGVAVENASFMGLAKGMARGGAPSAWLAIYKICWSTGGCSSADLLAAFDDAIFDGVHVLSASLGSDPPLPSYVEDALAIGSFHAVAKGISVVCSGGNSGPYPQTVINTAPWVITVAASTIDREFPSMITMGNNRTLQGQSLYTGKDLSKFYPIVYGEDIAVSDADQESARSCSPGSLNATLAKGKAILCFQSRSQRSATVAIRTVTEVKGAGLIFAQFPTKDVDTSWTKPCVQVDYITGTTILSYIEATRNPVIKFSKTKTVVGQQISPEVAFFSSRGPSSLSPSVLKPDIGAPGVNILAAWSPASSAGLLSEANEDESRPLNFNIESGTSMACPHISAIVALVKAIHPTWSWSPAAIKSALVTTASLQNEYNQYIWAEGAPHKQADPFDYGGGHVDPNKVADPGLIYDLKNSDYVHFLCSMGYNNTAISLLTGFRTKCHESPKFLLNMNLPSITIPELKQPLTVSRTVTNVGPIKSIYNARVVAPIGVSVVVEPSTLTFSSTRKKMKFKVTFSSKLRVQSRFSFGYLFWEDGLHKVRIPLAVRSVVDEFCAQT | 782 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca04g00379 | 782 | Gene3D | - | 349 | 491 | - | - | |
| Cca04g00379 | 782 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 115 | 630 | - | - | |
| Cca04g00379 | 782 | CDD | Peptidases_S8_3 | 110 | 595 | IPR034197 | - | |
| Cca04g00379 | 782 | Pfam | Fibronectin type-III domain | 676 | 771 | IPR041469 | - | |
| Cca04g00379 | 782 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 557 | 567 | IPR023828 | - | |
| Cca04g00379 | 782 | Gene3D | Peptidase S8/S53 domain | 138 | 643 | IPR036852 | GO:0004252|GO:0006508 | |
| Cca04g00379 | 782 | Pfam | Peptidase inhibitor I9 | 30 | 111 | IPR010259 | - | |
| Cca04g00379 | 782 | PRINTS | Subtilisin serine protease family (S8) signature | 556 | 572 | IPR015500 | - | |
| Cca04g00379 | 782 | PRINTS | Subtilisin serine protease family (S8) signature | 136 | 155 | IPR015500 | - | |
| Cca04g00379 | 782 | PRINTS | Subtilisin serine protease family (S8) signature | 216 | 229 | IPR015500 | - | |
| Cca04g00379 | 782 | PANTHER | OS09G0530800 PROTEIN | 41 | 771 | - | - | |
| Cca04g00379 | 782 | SUPERFAMILY | Subtilisin-like | 110 | 634 | IPR036852 | GO:0004252|GO:0006508 | |
| Cca04g00379 | 782 | CDD | PA_subtilisin_like | 356 | 483 | - | - | |
| Cca04g00379 | 782 | Pfam | Subtilase family | 136 | 595 | IPR000209 | GO:0006508|GO:0008236 | |
| Cca04g00379 | 782 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 41 | 771 | IPR045051 | - | |
| Cca04g00379 | 782 | Gene3D | Peptidase S8 propeptide/proteinase inhibitor I9 | 24 | 111 | IPR037045 | - | |
| Cca04g00379 | 782 | Gene3D | - | 647 | 775 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca04g00379 | Cca-Chr4 | 3828622 | 3834566 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca04g00379 | 10 | 775 | Subtilisin-like Serine Gene Family | AT4G10540 | 47.759 | 0.0 | 671 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca04g00379 | - | - | ccaj:109818399 | 1534.62 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca04g00379 | 04 | 3828622 | 3834566 | Cca04g00379 | 04 | 3828622 | 3834566 | ECH |