Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00378 ATGGAAGTTGCGGCGGCGAAAGCGCTTAAACCAAGCCTTAGGACTGAGTCTGTTTTCTCCCAAGCAATTTGCGACGATATTTTGTGCTTCAACGCCAACAACATTGTTGTCGGTGAAGATTTCTCCGTCGACGACCTCCTCGATTTTTCCAAAGAAATCGATAACTACGAGAACGAGGAAGACGAGGAAAAAGATTCCACCTCCGGTTCTTCGCAGTCGCAGGACCCAACAGAAGATGACAGCAACTCTAATTCCACCGCCGGAGGCGGTGACGACTCCGTTTTCGCCGGCGAGTTGTCAGTTCCGGCGGATGACGTGGCGGACCTGGAGTGGGTCTCTCACTTCGTAGACGATTCTCTCCCGGAGCTTTCCTTATTGTACCCTGTCCGTTCGGAGCAAACGAGGAAATGGGCCGAACCGGAACCTACACCGGTCCCGGACCAAGCCCAAGCCCAAACCCCCTCAGCCATCCCCAGAAAGCCGAGAACCGGAACGATTAGAAAGCCCAACGACCGTGTGTTGTCCTTTAACGCCTCGCTCCCGCCGCCGTTTTTGTGTTCTTCGGCTTTGGTTGGCTCTGTCAGGGGCATGGTGTTTGGCGAGCCGGCGGCTAAAAAGCAGAAGAAAAGGGCCGAGGCCCAAACCGGTGGGGCCCAGTTTCAGCGACGGTGCAGCCACTGTCAGGTGCAGAAAACGCCGCAGTGGAGGACCGGCCCACTGGGCCCGAAAACACTCTGCAACGCTTGCGGGGTTCGGTTCAAGTCCGGTCGGCTTTTTCCGGAGTATAGACCGGCCTGTAGCCCAACTTTCTCCGGAGATATTCACTCCAATAGTCATCGTAAAGTGTTGGAGATGAGGCGCAGAAAGGAGATGGCTGAACCGGTTACCGGCTCGAACCGGACTCAACTGGTCCCGAGCTGCTGA 924 0.5595 MEVAAAKALKPSLRTESVFSQAICDDILCFNANNIVVGEDFSVDDLLDFSKEIDNYENEEDEEKDSTSGSSQSQDPTEDDSNSNSTAGGGDDSVFAGELSVPADDVADLEWVSHFVDDSLPELSLLYPVRSEQTRKWAEPEPTPVPDQAQAQTPSAIPRKPRTGTIRKPNDRVLSFNASLPPPFLCSSALVGSVRGMVFGEPAAKKQKKRAEAQTGGAQFQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRRKEMAEPVTGSNRTQLVPSC 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00378 307 SMART GATA_3 218 272 IPR000679 GO:0006355|GO:0043565
Cca04g00378 307 ProSiteProfiles GATA-type zinc finger domain profile. 222 254 IPR000679 GO:0006355|GO:0043565
Cca04g00378 307 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Cca04g00378 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 281 - -
Cca04g00378 307 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Cca04g00378 307 MobiDBLite consensus disorder prediction 135 169 - -
Cca04g00378 307 PIRSF Txn_fac_GATA_plant 1 306 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cca04g00378 307 MobiDBLite consensus disorder prediction 69 90 - -
Cca04g00378 307 ProSitePatterns GATA-type zinc finger domain. 224 249 IPR000679 GO:0006355|GO:0043565
Cca04g00378 307 Coils Coil 46 66 - -
Cca04g00378 307 MobiDBLite consensus disorder prediction 55 97 - -
Cca04g00378 307 Pfam GATA zinc finger 224 257 IPR000679 GO:0006355|GO:0043565
Cca04g00378 307 Gene3D - 216 293 IPR013088 GO:0006355|GO:0008270
Cca04g00378 307 CDD ZnF_GATA 223 280 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00378 Cca-Chr4 3819842 3821342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00378 40 294 C2C2-Gata Transcription Factor Family AT4G36240 41.132 1.97e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca04g00378 GATA 3.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00378 - - gmx:100776188 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00378 04 3819842 3821342 Cca04g00378 04 3819842 3821342 ECH
Cca04g00378 04 3819842 3821342 Cca07g00097 07 1276121 1277700 ECH