Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00366 ATGGGGGAGAATGAAGAAGCGGCGAATGACATGATGCAGAGGCTTCACTTTCTGAAGCAGCCGCTGAACATGGAGCAGCTCAGCATACCGCAGTTCAACCCGTCGCAAATGCGAGCGAGGCATCAGCACAATCAGAGCCATCCGTTTCATCAGCAGAGTGTGGGCGGTGGAGAAGGTGGTAACAGTAGCAACAAGCGCGCGGGTATACCACCCTCGCACCCGCACCCGCACCAGATCCCGCCCATTTCGCCCTACTCTCAGATCCCGGTGTCGCGTCAGCAAATGGGGGGGTCGCACAGCATTTCCCCTACACCCACGCACACGCGATCACTCTCGCAGCCCTCCTTTTTCTCCCTGGATTccctccccccgctcagcccctcccccttccgcgactcctcctccacttccGTGTCCGAAGCTGCTGACGTGTCAATGGAGGATCGGGACGTCAGTTCGCATTCCCTGTTGCCACCCTCACCTTTCTCCAGAACACTCAACACCACCACCACCAACAATTTGCCCTTGCCCCCTCGAAAAGCGCATAGGCGTTCCAACAGTGATATCCCCTTTGGATTTTCCACCGTTTTGCAATCCTCGCCGCCGCTGATTCCTCTCCGGGGAAACCCCGGCTCGGCGAAGCCCGCGCAGTTGGTGAAACGGGAAACGCCGTGGGACCGTGGTGTTGAGCATAGTAATGTGGAGGGATCCGGGGAGAAGAAATCCCCTGAAGGGGAAGTGGTGGATGATCTTTTCTCTGCTTACATGAATTTGGATAGCTTTGATGCCTTGAACTCTTCCGGGACTGATGATAAGAACGGGGCCGAGAATCGCGATGATTTGGATAGTAGGGCGAGTGGGACCAAGACGAATGGTGGTGACAGTAGTGATAACGAAGCGGAGAGTAGTGTTAACGAGAGTGGGGATGGTGGGAGGCATGGAGTGAGTGAGAAGAGGGAGGGGATGAAGAGGAGTGCTGGGGGTGAGATTGCTCCCACCACCAGGCACTACAGGAGTGTTTCAATGGATAGTTTCATTGGGAAGTTGAACTTCGGTGATGAGTCGCCCAAGCTGCCTCCTTCGCCGGGGCAGAGAACCGGTTTGGTTTCGCCTGGCAATGGAATTGATGGGAATTCAGCCGCTTTCAGCTTGGAGTTTGGAAATGGGGAGTTTAGTGGGCCTGAATTGAAGAAAATCATGGCCAATGAGAAACTTGCTGAGATTGCTTTGTCAGATCCAAAGCGTGCGAAAAGGATTTTGGCCAATCGGCAATCGGCTGCGAGATCCAAGGAGCGGAAGATGCGGTACATTTCGGAACTAGAACACAAGGTTCAGACTCTACAGACAGAAGCCACCACCCTATCTGCACAGCTTACTCTGTTACAGAGAGATTCTGCTGGACTCACTAACCAGAATAGTGAGTTGAAGTTTCGGCTTCAATCCATGGAACAACAAGCAAAGCTCCGAGATGCTCTAAATGAGGCGCTTACTGCTGAGGTTCAAAGACTAAAGCTTGCTACTGCTGAGCTGAGTGGGGACTCGCATGGTTCTAGCTGTTTGATCCCTCAACATTCTGTCAACCCTCTGATGTTCCAGCAGCAGCAGCCTTCTGCGTCATCCCAACAAAACATTcatcatcttcaacagcaacagcagcaacagcatcagaatGGTAATGCCAACTCAAATTCTGACTTGAAACAATAA 1707 0.4991 MGENEEAANDMMQRLHFLKQPLNMEQLSIPQFNPSQMRARHQHNQSHPFHQQSVGGGEGGNSSNKRAGIPPSHPHPHQIPPISPYSQIPVSRQQMGGSHSISPTPTHTRSLSQPSFFSLDSLPPLSPSPFRDSSSTSVSEAADVSMEDRDVSSHSLLPPSPFSRTLNTTTTNNLPLPPRKAHRRSNSDIPFGFSTVLQSSPPLIPLRGNPGSAKPAQLVKRETPWDRGVEHSNVEGSGEKKSPEGEVVDDLFSAYMNLDSFDALNSSGTDDKNGAENRDDLDSRASGTKTNGGDSSDNEAESSVNESGDGGRHGVSEKREGMKRSAGGEIAPTTRHYRSVSMDSFIGKLNFGDESPKLPPSPGQRTGLVSPGNGIDGNSAAFSLEFGNGEFSGPELKKIMANEKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQNSELKFRLQSMEQQAKLRDALNEALTAEVQRLKLATAELSGDSHGSSCLIPQHSVNPLMFQQQQPSASSQQNIHHLQQQQQQQHQNGNANSNSDLKQ 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00366 568 MobiDBLite consensus disorder prediction 26 68 - -
Cca04g00366 568 MobiDBLite consensus disorder prediction 286 305 - -
Cca04g00366 568 MobiDBLite consensus disorder prediction 84 142 - -
Cca04g00366 568 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 412 475 IPR004827 GO:0003700|GO:0006355
Cca04g00366 568 Gene3D - 413 466 - -
Cca04g00366 568 MobiDBLite consensus disorder prediction 311 325 - -
Cca04g00366 568 CDD bZIP_plant_RF2 415 466 IPR044759 GO:0003700|GO:0006355
Cca04g00366 568 SUPERFAMILY Leucine zipper domain 414 465 IPR046347 GO:0003700|GO:0006355
Cca04g00366 568 SMART brlzneu 410 474 IPR004827 GO:0003700|GO:0006355
Cca04g00366 568 MobiDBLite consensus disorder prediction 26 248 - -
Cca04g00366 568 MobiDBLite consensus disorder prediction 220 247 - -
Cca04g00366 568 Pfam bZIP transcription factor 414 472 IPR004827 GO:0003700|GO:0006355
Cca04g00366 568 Coils Coil 430 485 - -
Cca04g00366 568 MobiDBLite consensus disorder prediction 188 202 - -
Cca04g00366 568 MobiDBLite consensus disorder prediction 532 568 - -
Cca04g00366 568 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 88 562 - -
Cca04g00366 568 MobiDBLite consensus disorder prediction 156 176 - -
Cca04g00366 568 MobiDBLite consensus disorder prediction 265 336 - -
Cca04g00366 568 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 88 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00366 Cca-Chr4 3699704 3703854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00366 1 533 bZIP Transcription Factor Family AT4G38900 57.699 2.96e-180 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca04g00366 bZIP_1 2.1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00366 - - gmx:778145 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00366 04 3699704 3703854 Cca04g00366 04 3699704 3703854 ECH