Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00354 ATGACAGTTGACAAGAGATTTGTTTTGGTGGGGATTAGAATTGATGGTCGTAGCAGACAGCTACTCAACTGGGCTCTTGTCAAAGTTGCGGAACCTGGGGATTGTGTTATAGCATTTCATGTTGTTAAAAGTTCAGATTATGTTTCAAAAAACAAGGCCATGATAGATGGTTATTTAGAAGTTTATGAAGGCCTGTGTGGTGTCAACAAGGTAGGTCTGACAGGTCAAATCTTCACAGGAAGCTCCATCCGAAACATTCTTGTTAGAGAAGCAAAAAACCATGCTGCCCTGGCTCTAGTGGTAGGGGGTCGAGGTGCCACAGCTAAATATTGCGCCAAGCGACTACCACCCACCACCAATGTTCTAGCCATCCATGACTCAAGAATTGTCTTCAGGAGGTGCACCAATAAACAACAACCAGGTAGTCTTATACTGGATCCAAGACCAAGTTTAACAAGCATTGAAGAAAAGTTGAGTAACAGAGTAATCCAGTCTGCATTTGGTGACTCCACCGTGGAGATTGAGAAACCAACACGCAAAAATTCCTTAGAATTGAAGGAAGAAGCGTTTAACGGATCAGAAAAGTGTGAGTCAAGGTCAATATCCATGTCTGCAGGTGATTCTGCAGAGCAGAAACTTGGGTGGCCTTTACTCCGCAGAACTAATTCAGGAGTCTCACAAACCCTTCATCCAAGGGACATGTCAGTGGTACAATGGGTAATGACCTTACCAGACCGTTCACCACATAAAAGTCCTCCTTCTCCTTCCATCCAGGAAAATCCATTCCAAAGGGGCATCAGATATATTGACGATGAGAGCTCTAAAAATTCTTCACTTTCATCCGTTGAGCTACCAACTGACCTAGAGGATATGTTAAACATAAATTCACTCAATTGCAAGTGGTTCAGCCTTGAGGTTCTAAAGTCTTGCACTAACCAATTCTCTTCAGAAAACTTGGTTGGAAAAGGAGGGAGCAATCGTGTGTACAAAGGAGTCCTCCCTGGTGAAAAGCCAATTGCAGTTAAAGTATTGCAGTCATCAAAAGAAGCCTGGAGAGATTTTGCCCTTGAGATGGAAATAATATCCTCATTGAAGCACAAAAGCATCGCCCCTCTACTTGGGATTTGCATGGAGAACAATACTTTAATCTCTGTTTATGATTATTTCCCCAGAGGCAGCTTAGAAGAAAATATGCATGGAAAGAACAAGGATGGATCCATCTTGTCATGGGAAGTGAGATTTAATATAGCTGTTAGGATCGCTGAAGCGCTTGATTACCTACACAGGGAAGCTTTGAAGCCAGTTATACATAGAGATGTCAAGTCTTCCAACATTCTTCTCTCCCAAGGGCTTGAACCACAATTGTCTGATTTCGGACTTGCAATATGGGGACCAACAAATTCATCCTTTTTGATACAAGATGTAGTTGGAACATTTGGCTATCTTGCTCCTGAGTACTTCATGTATGGAAAGGTCAGTGACAAGATAGATGTCTATGCCTTCGGTGTAGTGCTACTTGAACTAATATCAGGAAGGGAACCAATCAGCTCATCCGCTTGCATAGGACAGGAGAGTTTGGTTGTGTGGGCAAAACCAATAATAGACAGAGGGGATATTAAAGGCTTATTGGACCCAAATTTAGAAGGGAAAGCTAATGAGGCCCAATTGCAAAGAATGGTTCTGGCAGCATCCTTATGCATCACACGATCTGCTCGGCTTCGTCCTAAACTGAAACAGATACTGATGATCCTAAAAGGAGACGAGAAAGTTGAATATTTCCTCAACTCCAGTGAGGATGATCAGGAGGATTCAGAAAATCAAGAAAACATTGATGACGAAGTCTATCCAAATTCAAGTGCTGAGTTACATCTGAGTCTTGCATTGCTTGGTGTTGACGATGACAGTACCTCACATAGTAGCACAGACCACAGCTATAGTGAACACTTGAAAAGACGATGGAGCAGGAACAACAATAATAGTTATGAAACTATGAAAATGTCAAAAAGCTTACTATTATCTCAACCTATCGCTTCTTCCTGGTTTTTCGATTTGGGGGTTTTCTCAATGGACGACGGCGAGCTTGACTTTTCGAACCAGGAAGTGTTTTCGAGTCCGAACATGGGCGAGATTCCGAGCAGCGGTTCAATGGACAGCTTCTTCGACGAGCTTCTCAAGGACACGCACGCCTGCACGCACACCCACACGTGCAACCCTCCCGGCCCCGATTTCTCGCACACCCACACGTGCTACCACGTCCACACCAAGATTGTGCCCGCTCCGGCGGAGGACCTCGTCGCCACCGACGACACCGCCGAGTCCGCGGAGAAGAAGTCGTCAAAGAAGCGACCTTTGGGGAACAAGGAAGCGGTTCGCAAGTACAGAGAGAAGAAGAAGGCACGTGCGGCGTCGCTGGAGGACGAGGTTGTGAAACTGAGGGCTCTGAACCAGCATTTGATGAAGAAGCTGCAGGGGCAGGCTGCTCTGGAGGCTGAAATTGCGAGGTTGAAGTGTTTGCTTGTCGACATAAGGGGGAGGATTGAAGGGGAGATTGGGTCTTTTCCTTATCAGAAATCGCCCAATGCTAACCCTCCAATGGCTAACGTGCCTGGTTCTTATGTCATGAACCCTTGTAACGTGCAGTGTGATGACAGGGTGTATTGCCTTCGCCCTGGTGGGGATGGGAAGATTGGGGAGAGTGAGTCGTTGAATGTGGAAGGTTTTGGTGGTTGTGAGTTTGAGAACCTGCAGTGTCTTGCTGGCCAGAATTTGGGGCTCAAGGACCTTCGTGCTTGTGGGGTTGGACAACAGGCCGGGTCTAATGGATCAAGTAAAAGAAAAGGGGGATCTCGTGCAGCAACTGCTGGTTGA 2868 0.4571 MTVDKRFVLVGIRIDGRSRQLLNWALVKVAEPGDCVIAFHVVKSSDYVSKNKAMIDGYLEVYEGLCGVNKVGLTGQIFTGSSIRNILVREAKNHAALALVVGGRGATAKYCAKRLPPTTNVLAIHDSRIVFRRCTNKQQPGSLILDPRPSLTSIEEKLSNRVIQSAFGDSTVEIEKPTRKNSLELKEEAFNGSEKCESRSISMSAGDSAEQKLGWPLLRRTNSGVSQTLHPRDMSVVQWVMTLPDRSPHKSPPSPSIQENPFQRGIRYIDDESSKNSSLSSVELPTDLEDMLNINSLNCKWFSLEVLKSCTNQFSSENLVGKGGSNRVYKGVLPGEKPIAVKVLQSSKEAWRDFALEMEIISSLKHKSIAPLLGICMENNTLISVYDYFPRGSLEENMHGKNKDGSILSWEVRFNIAVRIAEALDYLHREALKPVIHRDVKSSNILLSQGLEPQLSDFGLAIWGPTNSSFLIQDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPISSSACIGQESLVVWAKPIIDRGDIKGLLDPNLEGKANEAQLQRMVLAASLCITRSARLRPKLKQILMILKGDEKVEYFLNSSEDDQEDSENQENIDDEVYPNSSAELHLSLALLGVDDDSTSHSSTDHSYSEHLKRRWSRNNNNSYETMKMSKSLLLSQPIASSWFFDLGVFSMDDGELDFSNQEVFSSPNMGEIPSSGSMDSFFDELLKDTHACTHTHTCNPPGPDFSHTHTCYHVHTKIVPAPAEDLVATDDTAESAEKKSSKKRPLGNKEAVRKYREKKKARAASLEDEVVKLRALNQHLMKKLQGQAALEAEIARLKCLLVDIRGRIEGEIGSFPYQKSPNANPPMANVPGSYVMNPCNVQCDDRVYCLRPGGDGKIGESESLNVEGFGGCEFENLQCLAGQNLGLKDLRACGVGQQAGSNGSSKRKGGSRAATAG 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00354 955 ProSiteProfiles Protein kinase domain profile. 314 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00354 955 Gene3D - 767 842 - -
Cca04g00354 955 Pfam Basic region leucine zipper 777 831 IPR004827 GO:0003700|GO:0006355
Cca04g00354 955 SMART serkin_6 314 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00354 955 SMART brlzneu 774 841 IPR004827 GO:0003700|GO:0006355
Cca04g00354 955 MobiDBLite consensus disorder prediction 761 791 - -
Cca04g00354 955 SUPERFAMILY Leucine zipper domain 781 824 IPR046347 GO:0003700|GO:0006355
Cca04g00354 955 CDD USP_Like 8 105 - -
Cca04g00354 955 CDD bZIP 780 833 - -
Cca04g00354 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Cca04g00354 955 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 6 651 - -
Cca04g00354 955 PANTHER OS01G0253100 PROTEIN 6 651 IPR045271 GO:0004714|GO:0006468
Cca04g00354 955 Coils Coil 787 821 - -
Cca04g00354 955 MobiDBLite consensus disorder prediction 934 955 - -
Cca04g00354 955 MobiDBLite consensus disorder prediction 769 791 - -
Cca04g00354 955 Gene3D Transferase(Phosphotransferase) domain 1 389 601 - -
Cca04g00354 955 SUPERFAMILY Protein kinase-like (PK-like) 299 586 IPR011009 -
Cca04g00354 955 Pfam Protein kinase domain 316 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00354 955 Gene3D Phosphorylase Kinase; domain 1 276 388 - -
Cca04g00354 955 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00354 Cca-Chr4 3451349 3462008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00354 689 954 bZIP Transcription Factor Family AT2G16770 63.469 4.69e-107 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Cca04g00354 Pkinase 2.6e-38 CL0016
TF bZIP Cca04g00354 Pkinase 2.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00354 - - gmx:100789189 1059.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00354 04 3451349 3462008 Cca04g00354 04 3451349 3462008 ECH