Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00347 ATGGCGTCTGGCGCGGTTTCCGCAAACGCGCGTTTCCTCCGAAGCACTTCCACAGAATCCCTCTACAGAAAACAAGTCGCGGTGGCCACCCTCCTCCAAAAGCACGGTTTCCCCTCCTTCCTCTCCCGCAACCCCTCCCTCCTCCGCACCCCTCTCCCCCACCTCCAAAACTCCCTCGCCACCCTCCTCTCCCTCCGCCTCCCCCAAAACGCCGTCGTTTCGCTCGTCACCGCTTCCCCCTCCTTCCTCCAGACCTGGGAATCGCGTTTCCCCGACCTCAAATCACGCTTCCCCAACCCCTCCCCCCAAGCCCTCGCCAACCTCCTCCTCGCTTCCGCAAAATTCCACCTCGACCCCTTCCATCTCTCCCGCAAACTCCAAACCCTAACAGAAAAATTCGCCTTCTCCGACGCCACCGTGGCCGCCATCCTCGAACGCTTCCCCGACGCGCTTGTCGCCACGGAGGATCAAATCTCAAGCGTGGTTGATTTTCTATCGGAATTCGAACTCGAAACCGATCGCATTGTTCGGTTATTCCCTAGGGTTTTGTGCCTCGGGGTCGAGGACAGGCTGAGGCCGTTGATTCGCGAAATTAAAGGGTTAGGGTTTCCCGGGAGGGTTATAAGAAAAGAGATCTCGAACGACCCGAGGATTCTGGCGATGGAAATCGGGGAATTTTCGCGGTGTTTGAGATTATTGGAGAGTTTGAAGTGCAGGGAAGCGATTAAGGAGAGGGTTACGGAGGAGGGTTTGGTGAGGGCGTGTTTGGAAGTGAAGCTAAGAGTGGATTGTTTGTGTGGCTATGGATTGACCCGAAGGGATGCTTTGAAGATTTTGTGGAAGGAGCCTCGGGTGATTGGTTATGAGATTGGGGATATTGAGAGGAAGGTTGAGTTTTTGGTGCAGAGGATGAAGTGTGATGTGGAGTGTTTGGCTGAGGTGCCTAAGTACTTGGGTGTGAGTTTTGAGAAGCAGATTGTGGCGAGGTATAGTGTGGTAGAGTATTTGAGGGGGAAGGGTGCGATTGGGTTTGATGTTGGGTTGAAGGATTTGGTTATGCCCTCTAGGATTAGGTTTTATAATCTCTATGTGAAGCCATACCCGGAGTGTGAGAAGATATATGGGAGGTTTTATGGGGGTGGTGAGGCTAAGAGGAAGCACCCGGTTGGACTGTGGAAGCTGTTTAAGCCGGAAAAGTTTCTGGAGAGTCGTGAAGATGTGAAGAATATGAGGTGCTTCATGGAAGCTCTGACCTAG 1257 0.5322 MASGAVSANARFLRSTSTESLYRKQVAVATLLQKHGFPSFLSRNPSLLRTPLPHLQNSLATLLSLRLPQNAVVSLVTASPSFLQTWESRFPDLKSRFPNPSPQALANLLLASAKFHLDPFHLSRKLQTLTEKFAFSDATVAAILERFPDALVATEDQISSVVDFLSEFELETDRIVRLFPRVLCLGVEDRLRPLIREIKGLGFPGRVIRKEISNDPRILAMEIGEFSRCLRLLESLKCREAIKERVTEEGLVRACLEVKLRVDCLCGYGLTRRDALKILWKEPRVIGYEIGDIERKVEFLVQRMKCDVECLAEVPKYLGVSFEKQIVARYSVVEYLRGKGAIGFDVGLKDLVMPSRIRFYNLYVKPYPECEKIYGRFYGGGEAKRKHPVGLWKLFKPEKFLESREDVKNMRCFMEALT 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00347 418 Gene3D Transcription termination factor 3, mitochondrial 154 377 IPR038538 -
Cca04g00347 418 SMART mt_12 308 342 IPR003690 GO:0003690|GO:0006355
Cca04g00347 418 SMART mt_12 173 204 IPR003690 GO:0003690|GO:0006355
Cca04g00347 418 SMART mt_12 209 239 IPR003690 GO:0003690|GO:0006355
Cca04g00347 418 SMART mt_12 141 171 IPR003690 GO:0003690|GO:0006355
Cca04g00347 418 SMART mt_12 38 68 IPR003690 GO:0003690|GO:0006355
Cca04g00347 418 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Cca04g00347 418 PANTHER CGI-12 PROTEIN-RELATED 35 416 IPR003690 GO:0003690|GO:0006355
Cca04g00347 418 Pfam mTERF 55 225 IPR003690 GO:0003690|GO:0006355
Cca04g00347 418 Pfam mTERF 260 341 IPR003690 GO:0003690|GO:0006355
Cca04g00347 418 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL 35 416 - -
Cca04g00347 418 Coils Coil 415 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00347 Cca-Chr4 3377948 3379204 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca04g00347 mTERF 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00347 - - gmx:100783135 604.364