Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00345 ATGGGAAGGTCTCCTTGCTGTGAGAAAGCTCACACAAACAAAGGTGCATGGACGAAGGAAGAAGATGACAGACTCATATCTTACATTCGAGCACACGGGGAGGGCTGCTGGCGCTCCCTCCCCAAAGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTCCGCCCCGACCTCAAACGCGGCAACTTCACCGAAGAAGAGGATGAACTCATCATCAAACTCCACAGCCTCCTCGGCAACAAGTGGTCCCTGATAGCTGGAAGATTGCCCGGGAGAACAGACAATGAAATAAAGAACTACTGGAACACTCACATAAGAAGGAAGCTTTTGAACAGAGGAATCGACCCTGCAACTCACAGGCCTCTTAACGAAGGCGTTTCCGCTGCAACTGTGACTGCCACTAACATATCTTTCGGCAAACAAGAGCAACAAGAAACAAGTAGTAGCAACGGAAGCGTGGTTGTTAAAGGTTCAATCTTGGAACGGTGCCCTGATTTGAACCTTGAACTTACCATTAGTCCTCCTCGTCAACCTGAGAAGACCCTTTGCTTTGTATGCAGTTTGGGTTTGCAGAACAGCAAGGACTGCAGCTGCAGCGTTGCCAACACTCCCACTGTCAACAACACTTCTCCTGCTTCTGCTTCTGCTTATGATTTCTTGGGCTTGAAAACCAACGCTGTTTGGGATTGCACCACCTTGGAAATGAAATGA 732 0.5055 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEGVSAATVTATNISFGKQEQQETSSSNGSVVVKGSILERCPDLNLELTISPPRQPEKTLCFVCSLGLQNSKDCSCSVANTPTVNNTSPASASAYDFLGLKTNAVWDCTTLEMK 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00345 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca04g00345 243 CDD SANT 69 112 IPR001005 -
Cca04g00345 243 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 209 - -
Cca04g00345 243 CDD SANT 16 61 IPR001005 -
Cca04g00345 243 Gene3D - 68 131 - -
Cca04g00345 243 SMART sant 66 114 IPR001005 -
Cca04g00345 243 SMART sant 13 63 IPR001005 -
Cca04g00345 243 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca04g00345 243 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Cca04g00345 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca04g00345 243 Gene3D - 14 66 - -
Cca04g00345 243 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca04g00345 243 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca04g00345 243 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 209 - -
Cca04g00345 243 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00345 Cca-Chr4 3362226 3363668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00345 1 243 MYB Transcription Factor Family AT4G38620 58.156 4.09e-107 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca04g00345 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00345 K09422 - gmx:780553 451.825