Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00338 ATGCGTAGAGCGATCGCGTTTCTCGTTCACCCACGATTCCTCCTTCTCTTCCTTGTTCTCTCAATTTTCCTCATTTTCACATTTTCTGGCTCTACTACTCCTAAACAGGTTGTTGAGGAGGAAACAGAAGAGGAGCCTGAAATTACACACAGAGTATTCTTGGATATTGATGTTGATAAACAACGTTTAGGTTGTCCAGCAATATTTTTAAAAATTTCATTCACAAAATGCTTTTGTTACAAAGAGGATGTAGAAAGCTTAATCAGCATAAAAAATGCTATTTTTTTTCTTTCCTATTTGCTATTTACCTATGCAACAACTTCTGCAGGTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCAAAAACTGTGGAAAATTTTAGAGCTTTGTGTACAGGGGAGAAAGGCAAGAATGCAAATGGCTTAAAGCTCCATTACAAAGGAACACCATTTCATCGGATAATATCTGGTTTCGTGATTCAGGGTGGAGACATTGTTCATCATGATGGCAAAGCGTCTGAATCTATTTATGGTGGTACCTTTCCTGACGAGAATTTCAAGATTAAACATTCTCATGCTGGCGTTGTCTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTTTCATTACCACAGTGAAGGCCAGTTGGTTGGATGGAGAGCATGTTGTCTTTGGCAAGGTTGTTCAGGGCATGGATATTGTGTATGTAATTGAAGGGGGTGCCGGAACCTACAGTGGAAAACCCAGAAAGAAGGTAGTGATAGCAGACTCTGGGGAGATACCCAAGATCCACTGGGACGAGGAAATTTGA 822 0.4039 MRRAIAFLVHPRFLLLFLVLSIFLIFTFSGSTTPKQVVEEETEEEPEITHRVFLDIDVDKQRLGCPAIFLKISFTKCFCYKEDVESLISIKNAIFFLSYLLFTYATTSAGRIVIGLYGQVVPKTVENFRALCTGEKGKNANGLKLHYKGTPFHRIISGFVIQGGDIVHHDGKASESIYGGTFPDENFKIKHSHAGVVSMANSGPDSNGSQFFITTVKASWLDGEHVVFGKVVQGMDIVYVIEGGAGTYSGKPRKKVVIADSGEIPKIHWDEEI 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00338 273 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 25 68 - -
Cca04g00338 273 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 152 164 IPR002130 GO:0000413|GO:0003755
Cca04g00338 273 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 131 IPR002130 GO:0000413|GO:0003755
Cca04g00338 273 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 195 210 IPR002130 GO:0000413|GO:0003755
Cca04g00338 273 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 223 238 IPR002130 GO:0000413|GO:0003755
Cca04g00338 273 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 210 222 IPR002130 GO:0000413|GO:0003755
Cca04g00338 273 SUPERFAMILY Cyclophilin-like 99 264 IPR029000 -
Cca04g00338 273 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 25 68 - -
Cca04g00338 273 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 99 263 IPR002130 GO:0000413|GO:0003755
Cca04g00338 273 Gene3D - 91 268 IPR029000 -
Cca04g00338 273 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 108 272 - -
Cca04g00338 273 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 106 261 IPR002130 GO:0000413|GO:0003755
Cca04g00338 273 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 108 272 - -
Cca04g00338 273 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 147 164 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00338 Cca-Chr4 3278105 3283116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00338 81 261 U-box Gene Family AT5G67530 40.110 7.12e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00338 - - gmx:100800775 388.652