Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00337 ATGCACCTCACCCAGCTCCAGCTCAACAACCTCTCCGTTGCCAAGGACGTTGGCAAAGCCTTTGGGCTTCTCGCGGGCCTCGCCTCCGACCGCCTCCCCACTTGGGTTATTCTCCTCATAGGCTCCGTGGAAGGCCTAGTGGGCTACGGGGGCCAATGGCTCGTCGTTAGCCAGAGAATTCAGCCCCTCCCCTACTGGCAGATGTGCGTGTTTCTGTGCTTGGGAGGCAACAGCACGACGTGGATGAACACTGCCGTTTTGGTAACTTGCATAAGAAACTTCCGCAGCAACAGAGGACCCGTTTCGGGCATTCTCAAAGGCTTCGTAGGGTTGAGCACTGCTATATTCACCAATCTCTGTTCCGCTCTCTTCGCCGATGACCCTGCCTCCTTTCTAATCATGCTCTCCGTGCTTCCCTTCGCGATTTGCCTCACCGGAATCTTTTTCCTCCGGGAGGTTCCTCCCGCTGACGACGACGACGCCGAAGAAGAGCTCAAGTACTTCGGCGTCTTCAACGCCGTCGCCGTTGTGATGGCGCTTTATCTGCTGGCGTATGGATTCATCCCCAGCCCCAGCGCGTTGCTGTCTCGAGTGTTCGTGGCGATTTTGGTGGTTATGCTTGCTTCGCCGTTGGGGATTCCAGTGTACTCGTTTTTGAAGGGACGGCACGGAGCGGCGGGGAATGACGTGGAGGTGCAGCGAGTGAAGGAGCCGTTGCTTGAGGGGCGGGAGGTGGAGGCGGTGATAGAGAAGAGGGCGCCGGTGGTGGGAGAGGAGCACACGATCATGGAGGCGGTTTCGAGCGTGGATTTTTGGATCTTGTTCGTGTCGTTTCTGTGTGGAGTGGGAACAGGTTTGGCGGTGATGAACAATATGGGTCAAATCGGGTTGGCGCTGGGATACCCAGATGTGTCGCTTTTCGTGTCGTTGACTAGCATATTTGGCTTTTTCGGACGCATCATCTCCGGTACCGTTTCCGAGTTCACCATCAAGAATGCTGCAACACCTAGACCTCTTTGGAATGCAGCATCTCAACTTCTAATGGCTGTAGGATACATACTCCTGGCCATGGCTATGCCAGGTTCCCTATACATTGGGTCTATTTTAGTTGGCATATGTTATGGAGTTAGGCTTGCCATTACAGTGCCAACAGCCTCAGAGTTATTTGGACTTAAATATTATGGTCTCATCTACAATATTCTCATCCTTAACCTTCCCCTGGGCTCTTTCCTTTTCTCTGGGCTGCTTGCTGGCATACTGTATGATATGGAAGCAACTACAAATGAGGCAGGAGGCAACACCTGTGTTGGAGGACATTGTTATAGGCTAGTCTTCATAGTCATGACTGGAGCATGTATTGTTGGGTTCTTCTTAGACATTCTATTGGCATTCAGAACCAAGAATATTTACAAGAAGATTTCCATGAGCAAGAAACCCAAGAAATCCTTGGCATCATCAAATAGCCAGTGA 1470 0.519 MHLTQLQLNNLSVAKDVGKAFGLLAGLASDRLPTWVILLIGSVEGLVGYGGQWLVVSQRIQPLPYWQMCVFLCLGGNSTTWMNTAVLVTCIRNFRSNRGPVSGILKGFVGLSTAIFTNLCSALFADDPASFLIMLSVLPFAICLTGIFFLREVPPADDDDAEEELKYFGVFNAVAVVMALYLLAYGFIPSPSALLSRVFVAILVVMLASPLGIPVYSFLKGRHGAAGNDVEVQRVKEPLLEGREVEAVIEKRAPVVGEEHTIMEAVSSVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYPDVSLFVSLTSIFGFFGRIISGTVSEFTIKNAATPRPLWNAASQLLMAVGYILLAMAMPGSLYIGSILVGICYGVRLAITVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGILYDMEATTNEAGGNTCVGGHCYRLVFIVMTGACIVGFFLDILLAFRTKNIYKKISMSKKPKKSLASSNSQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00337 489 Pfam Nodulin-like 2 215 IPR010658 -
Cca04g00337 489 CDD MFS_Mch1p_like 4 455 - -
Cca04g00337 489 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 1 242 - -
Cca04g00337 489 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 225 483 - -
Cca04g00337 489 Gene3D MFS general substrate transporter like domains 17 228 IPR036259 -
Cca04g00337 489 Gene3D MFS general substrate transporter like domains 264 487 IPR036259 -
Cca04g00337 489 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 225 483 - -
Cca04g00337 489 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 1 242 - -
Cca04g00337 489 SUPERFAMILY MFS general substrate transporter 21 468 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00337 Cca-Chr4 3264992 3270381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00337 1 482 Nodulin-like Gene Family AT4G34950 67.630 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00337 - - ccaj:109798664 918.302