Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00333 ATGAGTGCTAGGGTTACGGGGAAGGTCAAGTGGTTCAATGATACCAAGGGATTTGGATTCATAACCCCCGATGATGGCTCCGAGGATCTCTTCGTTCACCAATCGCAGATTCGATCTGACGGATTCCGAAGCCTCGCCGAGGGGGAGTCCGTCGAGTTCGCCATTGAGTCTGACTCCGACGGCCGCGCCAAGGCGGTCGAGGTCACCGGCCCCGACGGCTCCAGCGTTCAGGGCTCCAGGCGTGGTGGTGACGGTGGCGGCCGGAGTTACGGCGGTGGAAGAGGAGGCGGAGGCGGAGGCTACGGCGGAGGTGGCTATGGTGGAAGAGGCGGTGGTGGCGGTGGAGGCTGTTACAACTGTGGTGAGTCTGGTCACATGGCTAGGGACTGCTTTCAGGGAGGCAgtggaggcggcggcggcggtggagggaggtatggcggtggcggtggtggtggtggaaggtacggtggaggaggaggcggcggtggtggtggAAACTGCTACAGCTTGCCGGGGCGATGGCCACAGGGAGTGGGTGGTTTGGGGGCGGTGGATCTGACTTTTGCGAGGTTGAACGAACAAAGCTCTTTCGGGGGTGGTGCATCTAACTTAGTGGAGCCCTTCTGTGGCGCTGGACTTGCTAATGAGGACGATGATGTCGTGGTCGGTGAGGATCGACGTCACCGTGGAGTGTGTCGAGCGGCGAGAGGAAGGCTGAGTGGACGTCGACGGAGACGAGGAGACGATGGCCACGGTGATTGGCTAGTGCTTGTGCGACAACCATGGGGACTGGCTTGTGCGGGGATGACGGTGTTCTCCGGTAGTTCCTGGTTTCTTTGA 840 0.5357 MSARVTGKVKWFNDTKGFGFITPDDGSEDLFVHQSQIRSDGFRSLAEGESVEFAIESDSDGRAKAVEVTGPDGSSVQGSRRGGDGGGRSYGGGRGGGGGGYGGGGYGGRGGGGGGGCYNCGESGHMARDCFQGGSGGGGGGGGRYGGGGGGGGRYGGGGGGGGGGNCYSLPGRWPQGVGGLGAVDLTFARLNEQSSFGGGASNLVEPFCGAGLANEDDDVVVGEDRRHRGVCRAARGRLSGRRRRRGDDGHGDWLVLVRQPWGLACAGMTVFSGSSWFL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00333 279 Gene3D - 1 82 IPR012340 -
Cca04g00333 279 ProSiteProfiles Zinc finger CCHC-type profile. 117 130 IPR001878 GO:0003676|GO:0008270
Cca04g00333 279 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Cca04g00333 279 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 151 - -
Cca04g00333 279 SMART csp_8 6 71 IPR011129 GO:0003676
Cca04g00333 279 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Cca04g00333 279 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Cca04g00333 279 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Cca04g00333 279 SUPERFAMILY Retrovirus zinc finger-like domains 109 133 IPR036875 GO:0003676|GO:0008270
Cca04g00333 279 SMART c2hcfinal6 116 132 IPR001878 GO:0003676|GO:0008270
Cca04g00333 279 Coils Coil 279 279 - -
Cca04g00333 279 PANTHER COLD SHOCK PROTEIN 2 1 151 - -
Cca04g00333 279 Pfam Zinc knuckle 116 132 IPR001878 GO:0003676|GO:0008270
Cca04g00333 279 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Cca04g00333 279 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Cca04g00333 279 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Cca04g00333 279 SUPERFAMILY Nucleic acid-binding proteins 2 70 IPR012340 -
Cca04g00333 279 Gene3D - 111 139 - -
Cca04g00333 279 MobiDBLite consensus disorder prediction 57 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00333 Cca-Chr4 3224176 3228075 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Cca04g00333 CSD 3.9e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00333 - K09250 gmx:100799708 161.77