Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00332 ATGGCATCCCTATATGAAGTGCTGGGAATTTCAGTGGGTGCAAGCTGCGTGGAAATAAAGGCTGCATACAGAAAGCTAGCAAGAACGTACCATCCGGATGTTGTTGGCATGAATCAGAAGGAAAAGTCAGCAAACCAGTTCATGATGATCCATTCAGCTTACTCAACGTTGTCTGACCCAGAGAAGCGTGCTCAGTATGATAGGGAAATTTACAGACACAGAAGATCAGGAAATATGGTTTCCATGTCAGCAAGAAACCAGACATTTTCCTATGCTGCAAGTGGGAGGAAATGGGAAACGGATCAATGCTGGTAG 315 0.4476 MASLYEVLGISVGASCVEIKAAYRKLARTYHPDVVGMNQKEKSANQFMMIHSAYSTLSDPEKRAQYDREIYRHRRSGNMVSMSARNQTFSYAASGRKWETDQCW 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00332 104 ProSiteProfiles dnaJ domain profile. 3 70 IPR001623 -
Cca04g00332 104 PRINTS DnaJ domain signature 5 23 IPR001623 -
Cca04g00332 104 PRINTS DnaJ domain signature 23 38 IPR001623 -
Cca04g00332 104 PRINTS DnaJ domain signature 42 62 IPR001623 -
Cca04g00332 104 PRINTS DnaJ domain signature 62 81 IPR001623 -
Cca04g00332 104 Pfam DnaJ domain 4 67 IPR001623 -
Cca04g00332 104 SMART dnaj_3 2 62 IPR001623 -
Cca04g00332 104 PANTHER - 2 104 - -
Cca04g00332 104 CDD DnaJ 5 59 IPR001623 -
Cca04g00332 104 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Cca04g00332 104 Gene3D DnaJ domain 2 101 IPR036869 -
Cca04g00332 104 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 2 104 - -
Cca04g00332 104 SUPERFAMILY Chaperone J-domain 2 80 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00332 Cca-Chr4 3211608 3212571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00332 5 67 C2H2 Transcription Factor Family AT1G74250 47.761 1.04e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00332 - - gmx:100305807 188.348