Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00325 ATGAATCTCGTTCTTCTTATCTGTGTCATTCTTTTCTCAGGTTTTGAAGCTGAGGCCTTATCCTATGATTACAGTGCCAGCGTTGACTGTTTGGCACATCCACAGAAGCCTCTGTACAATGGAGGAATCATCCAAAACCCTGAACTGAACAATGGACTTCAAGGGTGGACTGCATTTGGGGGTGCAATAATAGAACATAGAGAATCATTAGGCAACAAATATGTGGTAGCCCATAGCAGAAATCAAATAGAAGATAGTGTCTCCCAGAAGATTTACCTGAAAAAGGATATGCACTATGCTTTGTCAGCTTGGATACAAGTGAGTGGGGAAAGTGTTCCCGTAACAGCAGTTGTCAAAACAACTACAACATCCAAATTTGCTGGTATAGTTTCTGCCGAGTCTAATTGTTGGTCTATGCTTAAGGGTGGTCTCACAGCGGATACATCAGGGCCAGCTGAGCTCTATTTTGAGAGCAACAGTACTTCTGCTGATATTTTGATAGACAACGTTTCGTTACAACCATTCACAGATGAGGAATGGAGGTCTCATCAAACTCAAAGCATTGAGAAGGCTCGTAAAAGGAAAGTTCTAATTCGAGCAGTTGATGAACAAGGAAAACCTTTACGAAATGCAACCATATCTTTAAAACAGAACAGGCTAGGCTTTCCATTTGGGAGTGCCATAAGCGGTGACATCCTGAACAACACACTATACCAGAACTGGATCACCTCTAGATTCACTGTCACCACATTCTCAAACGAAATGAAGTGGTACAGCACCGAAAACACGCGAGGCAGTGAGTACTACGCGGTTGCCGATGCCATGTTGCAGTTTGCAAAGCAACACAACATTGCTGTCAGAGGCCACAACATATTTTGGGATGATCCTAAGTACCAACCTAGTTGGGTTCCTTCACTTCCAACAAACGAGCTTAATGATGCAGTGGAAAGGAGGGTGACATCTGTTGTGTCGAGATATAGGGGCCAGCTTATTGCTTGGGATGTTGTGAATGAAAATCTGCACTTTTCGTTCTTTGAGGATAAACTTGGACAAACTTTTTCTGCCAAGATGTTTAATGAGGCTCACAGAATTGATGCACAAGTCCCTTTGTATTTGAATGAGTATAATACCATTGAGGATAGGAGGGATGGTACTTCAGCCCCATCAAAGTACATCCAGAAGCTCAGACAGATCCAAAGCTATCCTGGGAATGGAGGACTGCCATTTGGAATTGGGCTTGAAGCCCATTTCCCTGCTGTGGGTCTTAACCTTCCTTACATGAGAGCTTCCATTGATACTCTTGCTGCCACTGGTTACCCGGTTTGGATTACAGAAATAGATGTTGAAAATCAACCTAAGCAGACACAGGTCTTCGAGATTGTTCTTAGAGAGGCGCACGCACACCCAAAGGTTAGGGGTATTGTGATGTGGACAGCACCGTCACCACAAGGTTGCTATAGGACTTGTTTGGTAGATAAAAATTTCAAGAACTTGCCTGCAGGTAATGTTGTGGACAAGCTTATTAATGAGTGGAGTTCAGGCAAATTATCAGGGACAACAGATCAAAACGGGCTTCTTGAGGCCTCTCTTTTGCATGGGGACTATGAAGTAAAAATCACTCACCCTCTCAAGAAGAATTACACTTTCACACAGAAGCAACCCAAGAAATTTAGGAATATAGAAATCATAGAGAGACGAAAAGAATGGTTTTTTGCGGTCTGGGATGATTTCACATCTTTGTCAACCGTTTTTGAGCTGATTAAAGTAGCCGCAACATCACAAGACGATTCACGAGCACTTCTCGCACTCAAATCCTCCATAGACGTTCACCACAAGCTTCCATGGCGACAAGGAAGCGACGTGTGCACGTGGCAAGGTGTCAGAGACTGCTTCAACGGAAGGGTTCGGAAGCTTGTGCTGGAAAACTGCAACCTAACCGGAGCACTGGATTCGAAGATCTTGAACCGCTTGGACCAGCTCCGAGTACTGAGTTTCAAAGGAAACTCTCTCTCCGGCGAAATCCCCAACCTCTCCAAACTAATCAACCTCAAATCGATTTTCCTCAACGGCAACAACTTCTCCGGCGAGTTCCCCGCCTCCGTCGCGCTCCTCCACCGCGTCAAGGTCATCGTCCTGTCGGAGAATCACCTCTCCGGCGAAATCCCGGCGTCTCTGCTGAATCTCCGGCGACTCTACGTCCTCTACTTGCAAGACAACGCGTTTACGGGAACCATCCCTGGTTTCAACCAAACCAGCCTCAGGTACTTGAACGTCTCCAACAACCGACTCTCCGGCGAGATTCCGGTGACCTCCGCATTGATCCGGTTCAACGCGTCGTCGTTTTCAGGCAACCTAGGGCTCTGCGGGGAACAGATCCAAGAAGCATGCAGAAACGGTAACGTTTCGTTGCCGCCGTCGATAAGTCCAAGCTATCCGATGATTCCGTTAACGACGAGGAGAACGTCCAAGTCATCGAAATCGTGGAAGATAATCGGAGGGAGCGTTGGAGGCGTTGTTTTGGTTGCGTTGTGCGTGGTTTTGGCGTGGGCGATTTGCGCGAAGCGGAGGGGGAGAGTGGGTTCGGGAGCGAGGAGCAAGGGCGGCGGTGAGGCGGCGGAGGGAGAGGTTTACGCGGCGGGGAGTGGCGGCGGTGGTGGCGAAGGAGGAGGAGGAGGAGGTGAAGCGGAGGATAAACAAGGGGTTTTTGCTTGGGAGGGTGAGGGTCTAGGGAAGTTGGTGTTCTGCGGAGGAGGGGATCGGGAGATGAGTTATAGTTTGGAGGATTTATTGAAGGCTTCGGCGGAGACATTGGGGAGGGGTATTATGGGAAGTACGTATAAGGCAGTTATGGAGTCAGGGTTCATAGTTACTGTGAAGCGGTTGAAGGATGCTAGGTACCCTGGCTTGGAGGAGTTTAGGACTCACATTCAGGTCCTTGGAAGGCTCACCCACCCTAACTTGGTCCCACTTAGGGCTTATTTCCAGGCTAAGGAGGAACGTCTTCTTGTCTATGATTACTTTCCCAATGGCAGCCTCTTCTCCCTTATTCATGGATCAAAAACATCTGGCGGGGGGAAGCCTCTTCACTGGACATCCTGCCTTAAAATTGCTGAAGATCTAGCAACAGGCCTTCTCTATATCCACCAGAACCCTGGCTTGACACATGGAAACCTGAAATCCTCCAATGTGTTGCTAGGTTCTGACTTTGAGTCATGCCTCACTGATTATGGTCTCACAGTGTTCCTTAACCCTGACACAATGGATGAGCCTAGTGCCACTTCTTTGTTCTATAGAGCACCAGAATGCCGCAACTTTCTAAGGTCACAGACTCAACCAGCTGATGTATACAGTTTTGGGGTCCTTCTGCTTGAGCTTTTAACAGGGAAAACACCCTTCCAAGATCTTGTTCAGACATATGGCTCTGACATACCAAGATGGGTTCGGTCGGTGCGTGAAGAAGAGACTGAGTCAGGGGATGATCCTGCCTCAGGCAATGAAGCATCAGAAGAGAAGCTTCAGGCTCTTCTGAACATTGCAATGGCATGTGTTTCTCTTGTGCCTGAGAACAGGCCTACAATGAGAGATATGGTCAGATACAGTTCAAAGCTTTCCAAGGGAAGAACACCAGAGTATATGATTCATTGGTGA 3648 0.4753 MNLVLLICVILFSGFEAEALSYDYSASVDCLAHPQKPLYNGGIIQNPELNNGLQGWTAFGGAIIEHRESLGNKYVVAHSRNQIEDSVSQKIYLKKDMHYALSAWIQVSGESVPVTAVVKTTTTSKFAGIVSAESNCWSMLKGGLTADTSGPAELYFESNSTSADILIDNVSLQPFTDEEWRSHQTQSIEKARKRKVLIRAVDEQGKPLRNATISLKQNRLGFPFGSAISGDILNNTLYQNWITSRFTVTTFSNEMKWYSTENTRGSEYYAVADAMLQFAKQHNIAVRGHNIFWDDPKYQPSWVPSLPTNELNDAVERRVTSVVSRYRGQLIAWDVVNENLHFSFFEDKLGQTFSAKMFNEAHRIDAQVPLYLNEYNTIEDRRDGTSAPSKYIQKLRQIQSYPGNGGLPFGIGLEAHFPAVGLNLPYMRASIDTLAATGYPVWITEIDVENQPKQTQVFEIVLREAHAHPKVRGIVMWTAPSPQGCYRTCLVDKNFKNLPAGNVVDKLINEWSSGKLSGTTDQNGLLEASLLHGDYEVKITHPLKKNYTFTQKQPKKFRNIEIIERRKEWFFAVWDDFTSLSTVFELIKVAATSQDDSRALLALKSSIDVHHKLPWRQGSDVCTWQGVRDCFNGRVRKLVLENCNLTGALDSKILNRLDQLRVLSFKGNSLSGEIPNLSKLINLKSIFLNGNNFSGEFPASVALLHRVKVIVLSENHLSGEIPASLLNLRRLYVLYLQDNAFTGTIPGFNQTSLRYLNVSNNRLSGEIPVTSALIRFNASSFSGNLGLCGEQIQEACRNGNVSLPPSISPSYPMIPLTTRRTSKSSKSWKIIGGSVGGVVLVALCVVLAWAICAKRRGRVGSGARSKGGGEAAEGEVYAAGSGGGGGEGGGGGGEAEDKQGVFAWEGEGLGKLVFCGGGDREMSYSLEDLLKASAETLGRGIMGSTYKAVMESGFIVTVKRLKDARYPGLEEFRTHIQVLGRLTHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSKTSGGGKPLHWTSCLKIAEDLATGLLYIHQNPGLTHGNLKSSNVLLGSDFESCLTDYGLTVFLNPDTMDEPSATSLFYRAPECRNFLRSQTQPADVYSFGVLLLELLTGKTPFQDLVQTYGSDIPRWVRSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLVPENRPTMRDMVRYSSKLSKGRTPEYMIHW 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00325 1215 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 595 1199 - -
Cca04g00325 1215 SMART glyco_10 255 507 IPR001000 GO:0004553|GO:0005975
Cca04g00325 1215 Gene3D Ribonuclease Inhibitor 593 750 IPR032675 -
Cca04g00325 1215 SUPERFAMILY Galactose-binding domain-like 40 173 IPR008979 -
Cca04g00325 1215 Gene3D - 39 173 - -
Cca04g00325 1215 Gene3D Phosphorylase Kinase; domain 1 918 1006 - -
Cca04g00325 1215 Pfam Leucine rich repeat N-terminal domain 594 628 IPR013210 -
Cca04g00325 1215 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 595 1199 - -
Cca04g00325 1215 Gene3D Ribonuclease Inhibitor 751 800 IPR032675 -
Cca04g00325 1215 MobiDBLite consensus disorder prediction 878 897 - -
Cca04g00325 1215 ProSiteProfiles Protein kinase domain profile. 931 1203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00325 1215 Pfam Protein kinase domain 934 1198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00325 1215 SUPERFAMILY (Trans)glycosidases 207 514 IPR017853 -
Cca04g00325 1215 Pfam Carbohydrate binding domain 43 159 IPR003305 GO:0016798
Cca04g00325 1215 Gene3D Glycosidases 209 519 - -
Cca04g00325 1215 SUPERFAMILY Protein kinase-like (PK-like) 935 1198 IPR011009 -
Cca04g00325 1215 Pfam Glycosyl hydrolase family 10 222 479 IPR001000 GO:0004553|GO:0005975
Cca04g00325 1215 Gene3D Transferase(Phosphotransferase) domain 1 1007 1211 - -
Cca04g00325 1215 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 209 507 IPR001000 GO:0004553|GO:0005975
Cca04g00325 1215 SUPERFAMILY L domain-like 592 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00325 Cca-Chr4 3144769 3157161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00325 583 1198 Receptor kinase-like Gene Family AT1G60630 59.742 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca04g00325 Pkinase 2.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00325 - - gmx:100809866 949.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00325 04 3144769 3157161 Cca04g00325 04 3144769 3157161 ECH