Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00321 ATGGCATCGGCCTTCGTCAAGCTCGACGATTCCCCTATGTTCCAGAAACAGTTATATTCTCTTGAAGAAACAACTGATGAGTTAAAGGATCGGTGCCAGCAACTATATAAAGGGTGTAAGAAGTTTATGACAGCTTTGGGGGATGCATATAATGGAGAAATTGCCTTTGCTGATTCATTGGAAATATTTGGTGGTGGCCAAGATGACCCTGTCAGTGTATCAATTGGAGGTTGGCCTGTCATATCTAAGTTTATTAACACATTGCGTGAGCTAGCTACTTTTAAAGAGCTTCTTCGGTCACAGGTAGAGCATGTGTTGATTGACCGGCTGACAGAGTTTATGAATGTTGATCTGCAAGATGCAAAGGATTCTCGCCGCCGCTTTGACAAAGCTGTGCATTCTTATGATCAGTCACGAGAAAAGTTTGTCTCTTTGAAGAAGAATACACCGCAAGATGTTGTTTCTGAATTAGAAGAGGATCTACAAAATTCAAAATCAACATTTGAAAAAAGTCGCTTCAATCTAGTAAACTCTCTCATGAATATTGAAGCAAAAAAGAAGTACGAGTTTTTGGAGTCCATTAGTGCAATAATGGATGCTCATTTGAGATATTTTAAGCTGGGTTATGATTTACTAAGCCAAATGGAGCCCTATATTCACCAGGTGCTAACTTATGCACAGCAATCTAAAGAATTGGCTAATGTTGAGCAAGATAAGCTTGCCAAGCGGATTCAGGAATACAGAACACAGGCAGAGCTGGAGAATACACGAGCATCTAGCAATTATACAGAAACCATGCCCGGTTCCGATGGCACACATGTTGTAGGTTTGAACTCTTACAGAAGTTTTGAATCAGGGATTCAGTCTGCAGCAACCAAAGGGGAGGCAATTAAACAGGGCTATCTGTTAAAACGACCATCAACCATGCGTGGAGATTGGAAACGAAGGTTCTTTGTACTTGATAACCAAGGGAATTTATACTATTACAGAGTGAAGGGTACCAAACCCATGGGCTTTCAGTCATATAATTATACTCGTTCTTCTGAACAAAACAGCGGCATGTTTGGTAGATTCCGCTCAAGACACAACAGGGCTGCGTCGCTTAATGAGGATATTTTAGGTTGTTGTTCAATTGATCTGTGCACATCCACGATAAAGATGGATGCAGAGGATACAGATCTACGGCTTTGTTTTAGGATAATTTCTCCTTCAAAAACATATACACTACAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGAGCTATCACATCACTTTTTAATTCTCAGTTTCTTCAACAGCCTCAATACAGTAGAGTGCATTCAGATAATAAAACCTCAGCAATTGGTGCTTCGTTGGCAAGTCAATCAGAGGATAATCATAGATCTTTAAGGGATGAAGTATATTCCAAGGAAATGGGTAGTGTGTCAAATATTTTAAGGAGAATTCCTGGAAATGATAAATGTGCTGAGTGCAGTGCTTCTGAACCAGATTGGGCATCTCTAAACCTTGGCATATTGCTGTGTATTGAATGCTCTGGAGTGCATAGAAATCTTGGAGTGCATGTCTCAAAGGTGAGATCTATAACATTAGACGTTAGGGTTTGGGAACCTACCATTTTGGAGTTATTTGGTAACTTAGGTAATACTTATTGTAATTCAATCTGGGAGGGCTTGCTTCTACTTGATCATGAAAGGGTAGGTGAGTCAAATGTGCCTATGAAACCTTGCTCTGCAGATGCCTTCCAAGACAAGGAGAAGTACATCCAAGCAAAGTACGTAGAGAAATCTCTTATCATCCGAGAAGAGGATGTACCTGAGAATCCTTCAGTTTCCATAAGAATCTGGCAAGCAGTTCAGGCCGTAAACGTACGAGAAGTGTATCGCCTTATTGTCACATCAGCAACTTCAAATCTGATAAACACAAAATATAATGATGAGGTTTACCATGCTGATGCAGAAGGGAATCAGCATGATCCCGAAGCCTGTCTGAGTGATGAACAGACTAACGAGACACAGAGGTGTTTCCGTGGATGGTCATTATTACATCTTGCATGCCATACTGGCAGTGCATTGATGGTTGAGTTATTGCTCCAATTTGGTGCTGATGTAAACTTGCATGACTATCATGGAAGAACTCCCTTGCACCATTGCATTTCAAGTGGGAAAAATCAATTGGCAAAGTTTCTATTAAGAAGGGGTGCTAGGCCGTCAGTTAAAGATGCTGGTGGGCTCACTGTACTTGAAAGAGCAATGGAGTTGGGAGCAATAACTGACGAAGAACTATTTATCTTGCTTGCTGAATGCCAGTGA 2328 0.4081 MASAFVKLDDSPMFQKQLYSLEETTDELKDRCQQLYKGCKKFMTALGDAYNGEIAFADSLEIFGGGQDDPVSVSIGGWPVISKFINTLRELATFKELLRSQVEHVLIDRLTEFMNVDLQDAKDSRRRFDKAVHSYDQSREKFVSLKKNTPQDVVSELEEDLQNSKSTFEKSRFNLVNSLMNIEAKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANVEQDKLAKRIQEYRTQAELENTRASSNYTETMPGSDGTHVVGLNSYRSFESGIQSAATKGEAIKQGYLLKRPSTMRGDWKRRFFVLDNQGNLYYYRVKGTKPMGFQSYNYTRSSEQNSGMFGRFRSRHNRAASLNEDILGCCSIDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNSQFLQQPQYSRVHSDNKTSAIGASLASQSEDNHRSLRDEVYSKEMGSVSNILRRIPGNDKCAECSASEPDWASLNLGILLCIECSGVHRNLGVHVSKVRSITLDVRVWEPTILELFGNLGNTYCNSIWEGLLLLDHERVGESNVPMKPCSADAFQDKEKYIQAKYVEKSLIIREEDVPENPSVSIRIWQAVQAVNVREVYRLIVTSATSNLINTKYNDEVYHADAEGNQHDPEACLSDEQTNETQRCFRGWSLLHLACHTGSALMVELLLQFGADVNLHDYHGRTPLHHCISSGKNQLAKFLLRRGARPSVKDAGGLTVLERAMELGAITDEELFILLAECQ 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00321 775 PRINTS HIV Rev interacting protein signature 533 554 IPR001164 GO:0005096
Cca04g00321 775 PRINTS HIV Rev interacting protein signature 491 510 IPR001164 GO:0005096
Cca04g00321 775 PRINTS HIV Rev interacting protein signature 510 527 IPR001164 GO:0005096
Cca04g00321 775 SMART PH_update 296 431 IPR001849 -
Cca04g00321 775 Pfam Putative GTPase activating protein for Arf 483 604 IPR001164 GO:0005096
Cca04g00321 775 ProSiteProfiles Ankyrin repeat region circular profile. 715 746 - -
Cca04g00321 775 ProSiteProfiles BAR domain profile. 3 228 IPR004148 GO:0005515|GO:0005737
Cca04g00321 775 SUPERFAMILY BAR/IMD domain-like 8 318 IPR027267 -
Cca04g00321 775 Gene3D - 289 443 IPR011993 -
Cca04g00321 775 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 3 771 - -
Cca04g00321 775 SUPERFAMILY PH domain-like 285 444 - -
Cca04g00321 775 Gene3D Arf GTPase activating protein 459 611 IPR038508 -
Cca04g00321 775 SMART arf_gap_3 479 611 IPR001164 GO:0005096
Cca04g00321 775 ProSiteProfiles Ankyrin repeat profile. 682 714 IPR002110 GO:0005515
Cca04g00321 775 PANTHER CENTAURIN/ARF 3 771 IPR045258 GO:0005096
Cca04g00321 775 Coils Coil 230 250 - -
Cca04g00321 775 SUPERFAMILY ArfGap/RecO-like zinc finger 482 604 IPR037278 -
Cca04g00321 775 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Cca04g00321 775 Gene3D - 618 766 IPR036770 -
Cca04g00321 775 CDD PH_ACAP 298 433 - -
Cca04g00321 775 Pfam Ankyrin repeats (3 copies) 675 746 IPR002110 GO:0005515
Cca04g00321 775 ProSiteProfiles Ankyrin repeat region circular profile. 682 713 - -
Cca04g00321 775 ProSiteProfiles ARF GTPase-activating proteins domain profile. 479 611 IPR001164 GO:0005096
Cca04g00321 775 Pfam BAR domain of APPL family 8 231 - -
Cca04g00321 775 SMART ANK_2a 682 711 IPR002110 GO:0005515
Cca04g00321 775 SMART ANK_2a 715 744 IPR002110 GO:0005515
Cca04g00321 775 ProSiteProfiles PH domain profile. 295 429 IPR001849 -
Cca04g00321 775 ProSiteProfiles Ankyrin repeat profile. 715 747 IPR002110 GO:0005515
Cca04g00321 775 Pfam PH domain 297 428 IPR001849 -
Cca04g00321 775 CDD BAR_SFC_plant 16 218 IPR035670 -
Cca04g00321 775 CDD ArfGap 483 598 - -
Cca04g00321 775 SUPERFAMILY Ankyrin repeat 622 771 IPR036770 -
Cca04g00321 775 SMART 5bar 13 221 IPR004148 GO:0005515|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00321 Cca-Chr4 3104150 3116284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00321 485 598 C2H2 Transcription Factor Family AT3G07940 41.739 4.89e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00321 K12489 - gmx:100796740 1394.79