Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00316 ATGGAGGCACTGTGTGGGTCTCTGTTGCGCCACAATGCGGCGTTGATCGAATTGGGGAGCGAAGACACCGCTTTGATGCGGTGCGGTTTGGAAGGTGCGAGGTTGTTTTTCAGAAGTAGGGCCCACCTCGGCGTTGGGAAGGGTAGCCGCGGGGTTTACATGTACAGAGCAGGAAGGGCTTTGGAGGATTGGGATTCTTCTCCCCCTTGCATGGCTGATATTTTTAGGTGCATGGGAAAGGCATCTCGGTCTGCCTTGTGTGCCATTGCAAGACATTTGCGTCTTAGAAGCGATGTTTTCAACCATTTGCTTGATGATAATCCATTGCCTTCCAATGAGGTCTCTTCATCAGTTCTTGTTGTGACCTACTCACATGCTTCTTTGCAAAATGGTAGAGGTGCCATTGGAGGTGGTAAGCCTACCATGAATGGCGAAGTTGAGAAGGGATTGTTGACGTTGATATCTTCTGACACTCCTGGTCTTCAGGTATGTGACCCTAGCGGTCGCTGGTATCTGGCAGACAGTGGGTCTGGGCCTGGAGATCTTTTACTGATAACAGGCAAGGCACTTAGCCATGCTACTGCTGGCCTACGTCCTGCTGCATCATATAGAGCTTCTCCTGATTATTTTTTGAGTCCTAATGGTGGAGGAAGGACTTCTCTAGCATATAGACTCATGCCACAGGGCAATGCTATATTAGATTGTTCCCCAATTGCAGCTGCTGGCCATGTTATTCCCCAGAGCTATGTTCCAATATCTGTAAGCCAATTTATGGATGATCTTGCTGCCGAAGAACTGATAGGCAGCAGATGTGATATTACTGATGTTGCTTCTCAAAACAATGTGAATAAGGAGCCATCATTAAGAAGTGTCCTATCAGATCCTTTATCTGGCACATTCCTTGAAGATGCCATGCTTGTCTCATGTGGACATTCTTTTGGTGGTCTCATGCTGAGGAGAGTCATTGAAACATCAAGATGTACTCTCTGCAGTGCAGAAATTGAAACTGGTTCTTTGATCCCTAATCTTGCTCTTAGAGCTGCAGCTGCAGCTGTCAAGCATGAGGATGAACGGAGGTTATTTCGTAATGCTGCTCTCCGAAAGCGGCGGAAAGAAATGGGTGACCAAATGGATTCAATGAGAAGAGTGAACAGGGAAAATGGAGATTTTACTGCTGCTGATGGACTCCAGCGGGGAGTACAATATCCATTTTCAGTAAATGAGAAAGTTATTATTAAGGGTAACAGGAGAACGCCTGAAAAATTTGTTGGGAAAGAAGCTGTGATTACATCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGGAACCGGAGAGAATGTCCGCTTGCAGTACCGTTCTCTTAGGAAGCTCTTAAACACTCCAGCGGACCAGTGTCCCTCACAGCCAATTCAAAATAGCAGCTCTTAA 1434 0.4637 MEALCGSLLRHNAALIELGSEDTALMRCGLEGARLFFRSRAHLGVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKASRSALCAIARHLRLRSDVFNHLLDDNPLPSNEVSSSVLVVTYSHASLQNGRGAIGGGKPTMNGEVEKGLLTLISSDTPGLQVCDPSGRWYLADSGSGPGDLLLITGKALSHATAGLRPAASYRASPDYFLSPNGGGRTSLAYRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLAAEELIGSRCDITDVASQNNVNKEPSLRSVLSDPLSGTFLEDAMLVSCGHSFGGLMLRRVIETSRCTLCSAEIETGSLIPNLALRAAAAAVKHEDERRLFRNAALRKRRKEMGDQMDSMRRVNRENGDFTAADGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKLLNTPADQCPSQPIQNSSS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00316 477 Gene3D - 51 266 IPR027443 -
Cca04g00316 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 357 IPR013083 -
Cca04g00316 477 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 475 - -
Cca04g00316 477 SUPERFAMILY RING/U-box 288 354 - -
Cca04g00316 477 SUPERFAMILY Clavaminate synthase-like 69 237 - -
Cca04g00316 477 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 1 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00316 Cca-Chr4 3068268 3079671 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00316 288 474 Plant U-box Gene Family AT5G05230 39.894 4.10e-40 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00316 - - ccaj:109798577 939.873