Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00315 ATGGCAACCCATCCTGGAAAACATGCTCCTTCAAATGGGTCTGTCTATGTATGCAACTTGCCCTATGGGACTGACGACAATATGCTGGCTGAATATTTTGGCACCATTGGAGTAATAAAGAAAGATAAACGTACAGGGAGGCCAAAAATATGGTTATATCGAGACAAAGAGACTAATGAACCAAAGGGAGATGCTACCGTAACTTATGAGGATCCACATGCTGCTGTAGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAGTACAATTGGGGTTTTTATAGCAGAGTCAAAAAACAAGGATGACCAAACATATAATTCAGTTGTAGAACCAGAAGTTGCTGGTAATGTTGGTGGACTAGAGGGAAATACCAAGGATGTTAATGGTGGTAGTGGAAGAGGTAGAGGTCAAATTGATACTTCAGGCAAAGCATGGCAACAAGAGGGCGATTGGTTGTGTCCGAATACAAGTTGCTCCaatgtgaactttgcttttcgtggtgcgtgtaatcgctgtggaactgctcgtcctgctggtgcttctggagtttcaggggctggtggccgTGGCAAAGGACGTGCTGGACAAGAAGCAGGGGGTGTTGGCCGACCTGTTGCTGGAGGACTCTTTGGTCCCAATGATTGGCCTTGTCCAATGTGTGGCAATATCAATTGGGCAAAGCGGACTAAATGCAATATTTGCAATACAAATAAGCCTGGGCATAATGAAGGTGGTGTAAGAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATAGAAGAAACTAGGCGTCGTAGGAGGGAAGCTGAAGATGATGGAGAGTTGTATGATGAATTTGGAAATTTAAAGAAAAAATTCCGTGCCAAAACACAGCAAGCTGAAGCTGCACGTGGAATTCCTGGTGCAGGGCGTGCTGGTTGGGAGGTTGAAGAACTAGGGATAGACAGGGATGCTAGAGAAAGTAGAGACAGAGGGAGGGATCGTAATGATGGGGATAGCAGGAACAGAGAGCGAGAGATTATGGGCGAGACCGGGACCGAAGTAGACACCGTTATTGAAAGTAGCAGCAAGAGATTCTTTGCTGAACGACAAAAGGTGAAGCTGACACGTGGTGAGTTGACACGTTCGGGCAACCGTTTGGTTGAGTGGAAGCGCGTGACAGGTCCGGACCCGAGTGGTTCCTCTCTCCGTTCACAACAGTTTTGTTTGGTTGTCCTCCTCCATTTTCACCCCCTTTTAAGTCATATCATAACCCCTTCAAATTCCTCCAAACCCTATCTCTCCCTCTCTTCACCTTCATTTCGTGCCGACCTTCGGCTTAGGGCATTTTACCGGCGGAGAAAGGCAGATTTGGACCTTGATCTTAACCGTGTGCCGACTGGTGAGAATCGTGAGCAGGAGGGACCTTCGAATCAGTCGGGGCCTCAGGAAGCTCAGGTTCAACAGCAGCCGCAGGTTCCTCAACCTCCCTTGATTGACGTGGAAGCTATTGATGATGATGTTGTTGAATGTACCCCAACTGCTTTTGCTGAGGCTAAAAACTATTCAAGAAGAAATCGTGGGAGGACTATCGTTGATGTTGATTCAGAAGATCCGACTAGGGTAGCTGACAATAATCAAAACAAACGCAGAAGACAATCGAATCCAACAATTATTATTTGTGATGAATATATAAATTTGGAAGGTGGTGGCAGTTCTATGAAAAAGCCACCTGAACCACCAAAGGAGCCTGTCTTCAACTGTCCGATATGTATAGGTCCTTTGGTAGAAGAAACTTCGACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATCAAGTCTGCTATAAGTGCTCAGGTTGAAGGTTTTCCGTCAGGAAAATGGGGAATGGAAGAAGCATCATTGCACTTTGGACATTCCTGGCGAGCAAATTGCCTAGACTCGCTATCACGTTTGAAGGCCTCAAAAGTTGAAGCCCAAAGGGTGAAAAAGCCATATTTCATTCCAACAAGAACGCTTCTAGTTATGCCTAGCCTCAACCACAAGCTAAACAAGTCGAGCAAAAGAATCAAAATAGCAGTTTCCAAGGGCACAATAAGGAGCACAACTTCTGTTAGGATGCAAATGAGCAAAAAGGGGTGTGATGATGAGAAGGTCAACCTCAATGAAGACGAGGAACTATGTCAAATTAAGATTGACGACGTTGTTAAAGGCCTTTGGATAAGAGGACAGTGA 2229 0.4325 MATHPGKHAPSNGSVYVCNLPYGTDDNMLAEYFGTIGVIKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGSTIGVFIAESKNKDDQTYNSVVEPEVAGNVGGLEGNTKDVNGGSGRGRGQIDTSGKAWQQEGDWLCPNTSCSNVNFAFRGACNRCGTARPAGASGVSGAGGRGKGRAGQEAGGVGRPVAGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETRRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARGIPGAGRAGWEVEELGIDRDARESRDRGRDRNDGDSRNREREIMGETGTEVDTVIESSSKRFFAERQKVKLTRGELTRSGNRLVEWKRVTGPDPSGSSLRSQQFCLVVLLHFHPLLSHIITPSNSSKPYLSLSSPSFRADLRLRAFYRRRKADLDLDLNRVPTGENREQEGPSNQSGPQEAQVQQQPQVPQPPLIDVEAIDDDVVECTPTAFAEAKNYSRRNRGRTIVDVDSEDPTRVADNNQNKRRRQSNPTIIICDEYINLEGGGSSMKKPPEPPKEPVFNCPICIGPLVEETSTRCGHIFCKNCIKSAISAQVEGFPSGKWGMEEASLHFGHSWRANCLDSLSRLKASKVEAQRVKKPYFIPTRTLLVMPSLNHKLNKSSKRIKIAVSKGTIRSTTSVRMQMSKKGCDDEKVNLNEDEELCQIKIDDVVKGLWIRGQ 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00315 742 MobiDBLite consensus disorder prediction 118 145 - -
Cca04g00315 742 Gene3D - 212 243 - -
Cca04g00315 742 Gene3D - 146 182 - -
Cca04g00315 742 Pfam Zn-finger in Ran binding protein and others 150 179 IPR001876 -
Cca04g00315 742 Pfam Zn-finger in Ran binding protein and others 216 242 IPR001876 -
Cca04g00315 742 MobiDBLite consensus disorder prediction 180 201 - -
Cca04g00315 742 ProSiteProfiles Zinc finger RanBP2 type profile. 213 242 IPR001876 -
Cca04g00315 742 ProSiteProfiles Zinc finger RanBP2 type profile. 149 180 IPR001876 -
Cca04g00315 742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 535 625 IPR013083 -
Cca04g00315 742 MobiDBLite consensus disorder prediction 459 491 - -
Cca04g00315 742 MobiDBLite consensus disorder prediction 254 277 - -
Cca04g00315 742 ProSiteProfiles Zinc finger RING-type profile. 586 612 IPR001841 -
Cca04g00315 742 Coils Coil 257 277 - -
Cca04g00315 742 ProSitePatterns Zinc finger RING-type signature. 601 610 IPR017907 -
Cca04g00315 742 ProSitePatterns Zinc finger RanBP2-type signature. 153 174 IPR001876 -
Cca04g00315 742 SUPERFAMILY RING/U-box 581 617 - -
Cca04g00315 742 Gene3D - 12 95 IPR012677 -
Cca04g00315 742 MobiDBLite consensus disorder prediction 247 277 - -
Cca04g00315 742 MobiDBLite consensus disorder prediction 321 349 - -
Cca04g00315 742 ProSitePatterns Zinc finger RanBP2-type signature. 217 236 IPR001876 -
Cca04g00315 742 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Cca04g00315 742 CDD RRM_SARFH 15 97 - -
Cca04g00315 742 SUPERFAMILY Ran binding protein zinc finger-like 209 243 IPR036443 -
Cca04g00315 742 SMART rrm1_1 14 95 IPR000504 GO:0003723
Cca04g00315 742 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 1 370 - -
Cca04g00315 742 MobiDBLite consensus disorder prediction 468 491 - -
Cca04g00315 742 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 1 370 - -
Cca04g00315 742 SUPERFAMILY Ran binding protein zinc finger-like 144 181 IPR036443 -
Cca04g00315 742 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Cca04g00315 742 Pfam Zinc finger, C3HC4 type (RING finger) 586 615 IPR018957 GO:0046872
Cca04g00315 742 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 92 IPR000504 GO:0003723
Cca04g00315 742 SMART zf_4 215 239 IPR001876 -
Cca04g00315 742 SMART zf_4 151 177 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00315 Cca-Chr4 3036974 3055380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00315 450 617 C3H Transcription Factor Family AT5G48655 48.000 7.52e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00315 - - gmx:100780819 560.836