Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g00315 | ATGGCAACCCATCCTGGAAAACATGCTCCTTCAAATGGGTCTGTCTATGTATGCAACTTGCCCTATGGGACTGACGACAATATGCTGGCTGAATATTTTGGCACCATTGGAGTAATAAAGAAAGATAAACGTACAGGGAGGCCAAAAATATGGTTATATCGAGACAAAGAGACTAATGAACCAAAGGGAGATGCTACCGTAACTTATGAGGATCCACATGCTGCTGTAGCTGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAGTACAATTGGGGTTTTTATAGCAGAGTCAAAAAACAAGGATGACCAAACATATAATTCAGTTGTAGAACCAGAAGTTGCTGGTAATGTTGGTGGACTAGAGGGAAATACCAAGGATGTTAATGGTGGTAGTGGAAGAGGTAGAGGTCAAATTGATACTTCAGGCAAAGCATGGCAACAAGAGGGCGATTGGTTGTGTCCGAATACAAGTTGCTCCaatgtgaactttgcttttcgtggtgcgtgtaatcgctgtggaactgctcgtcctgctggtgcttctggagtttcaggggctggtggccgTGGCAAAGGACGTGCTGGACAAGAAGCAGGGGGTGTTGGCCGACCTGTTGCTGGAGGACTCTTTGGTCCCAATGATTGGCCTTGTCCAATGTGTGGCAATATCAATTGGGCAAAGCGGACTAAATGCAATATTTGCAATACAAATAAGCCTGGGCATAATGAAGGTGGTGTAAGAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATAGAAGAAACTAGGCGTCGTAGGAGGGAAGCTGAAGATGATGGAGAGTTGTATGATGAATTTGGAAATTTAAAGAAAAAATTCCGTGCCAAAACACAGCAAGCTGAAGCTGCACGTGGAATTCCTGGTGCAGGGCGTGCTGGTTGGGAGGTTGAAGAACTAGGGATAGACAGGGATGCTAGAGAAAGTAGAGACAGAGGGAGGGATCGTAATGATGGGGATAGCAGGAACAGAGAGCGAGAGATTATGGGCGAGACCGGGACCGAAGTAGACACCGTTATTGAAAGTAGCAGCAAGAGATTCTTTGCTGAACGACAAAAGGTGAAGCTGACACGTGGTGAGTTGACACGTTCGGGCAACCGTTTGGTTGAGTGGAAGCGCGTGACAGGTCCGGACCCGAGTGGTTCCTCTCTCCGTTCACAACAGTTTTGTTTGGTTGTCCTCCTCCATTTTCACCCCCTTTTAAGTCATATCATAACCCCTTCAAATTCCTCCAAACCCTATCTCTCCCTCTCTTCACCTTCATTTCGTGCCGACCTTCGGCTTAGGGCATTTTACCGGCGGAGAAAGGCAGATTTGGACCTTGATCTTAACCGTGTGCCGACTGGTGAGAATCGTGAGCAGGAGGGACCTTCGAATCAGTCGGGGCCTCAGGAAGCTCAGGTTCAACAGCAGCCGCAGGTTCCTCAACCTCCCTTGATTGACGTGGAAGCTATTGATGATGATGTTGTTGAATGTACCCCAACTGCTTTTGCTGAGGCTAAAAACTATTCAAGAAGAAATCGTGGGAGGACTATCGTTGATGTTGATTCAGAAGATCCGACTAGGGTAGCTGACAATAATCAAAACAAACGCAGAAGACAATCGAATCCAACAATTATTATTTGTGATGAATATATAAATTTGGAAGGTGGTGGCAGTTCTATGAAAAAGCCACCTGAACCACCAAAGGAGCCTGTCTTCAACTGTCCGATATGTATAGGTCCTTTGGTAGAAGAAACTTCGACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATCAAGTCTGCTATAAGTGCTCAGGTTGAAGGTTTTCCGTCAGGAAAATGGGGAATGGAAGAAGCATCATTGCACTTTGGACATTCCTGGCGAGCAAATTGCCTAGACTCGCTATCACGTTTGAAGGCCTCAAAAGTTGAAGCCCAAAGGGTGAAAAAGCCATATTTCATTCCAACAAGAACGCTTCTAGTTATGCCTAGCCTCAACCACAAGCTAAACAAGTCGAGCAAAAGAATCAAAATAGCAGTTTCCAAGGGCACAATAAGGAGCACAACTTCTGTTAGGATGCAAATGAGCAAAAAGGGGTGTGATGATGAGAAGGTCAACCTCAATGAAGACGAGGAACTATGTCAAATTAAGATTGACGACGTTGTTAAAGGCCTTTGGATAAGAGGACAGTGA | 2229 | 0.4325 | MATHPGKHAPSNGSVYVCNLPYGTDDNMLAEYFGTIGVIKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAVAAVEWFNNKDFHGSTIGVFIAESKNKDDQTYNSVVEPEVAGNVGGLEGNTKDVNGGSGRGRGQIDTSGKAWQQEGDWLCPNTSCSNVNFAFRGACNRCGTARPAGASGVSGAGGRGKGRAGQEAGGVGRPVAGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETRRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARGIPGAGRAGWEVEELGIDRDARESRDRGRDRNDGDSRNREREIMGETGTEVDTVIESSSKRFFAERQKVKLTRGELTRSGNRLVEWKRVTGPDPSGSSLRSQQFCLVVLLHFHPLLSHIITPSNSSKPYLSLSSPSFRADLRLRAFYRRRKADLDLDLNRVPTGENREQEGPSNQSGPQEAQVQQQPQVPQPPLIDVEAIDDDVVECTPTAFAEAKNYSRRNRGRTIVDVDSEDPTRVADNNQNKRRRQSNPTIIICDEYINLEGGGSSMKKPPEPPKEPVFNCPICIGPLVEETSTRCGHIFCKNCIKSAISAQVEGFPSGKWGMEEASLHFGHSWRANCLDSLSRLKASKVEAQRVKKPYFIPTRTLLVMPSLNHKLNKSSKRIKIAVSKGTIRSTTSVRMQMSKKGCDDEKVNLNEDEELCQIKIDDVVKGLWIRGQ | 742 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g00315 | 742 | MobiDBLite | consensus disorder prediction | 118 | 145 | - | - | |
Cca04g00315 | 742 | Gene3D | - | 212 | 243 | - | - | |
Cca04g00315 | 742 | Gene3D | - | 146 | 182 | - | - | |
Cca04g00315 | 742 | Pfam | Zn-finger in Ran binding protein and others | 150 | 179 | IPR001876 | - | |
Cca04g00315 | 742 | Pfam | Zn-finger in Ran binding protein and others | 216 | 242 | IPR001876 | - | |
Cca04g00315 | 742 | MobiDBLite | consensus disorder prediction | 180 | 201 | - | - | |
Cca04g00315 | 742 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 213 | 242 | IPR001876 | - | |
Cca04g00315 | 742 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 149 | 180 | IPR001876 | - | |
Cca04g00315 | 742 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 535 | 625 | IPR013083 | - | |
Cca04g00315 | 742 | MobiDBLite | consensus disorder prediction | 459 | 491 | - | - | |
Cca04g00315 | 742 | MobiDBLite | consensus disorder prediction | 254 | 277 | - | - | |
Cca04g00315 | 742 | ProSiteProfiles | Zinc finger RING-type profile. | 586 | 612 | IPR001841 | - | |
Cca04g00315 | 742 | Coils | Coil | 257 | 277 | - | - | |
Cca04g00315 | 742 | ProSitePatterns | Zinc finger RING-type signature. | 601 | 610 | IPR017907 | - | |
Cca04g00315 | 742 | ProSitePatterns | Zinc finger RanBP2-type signature. | 153 | 174 | IPR001876 | - | |
Cca04g00315 | 742 | SUPERFAMILY | RING/U-box | 581 | 617 | - | - | |
Cca04g00315 | 742 | Gene3D | - | 12 | 95 | IPR012677 | - | |
Cca04g00315 | 742 | MobiDBLite | consensus disorder prediction | 247 | 277 | - | - | |
Cca04g00315 | 742 | MobiDBLite | consensus disorder prediction | 321 | 349 | - | - | |
Cca04g00315 | 742 | ProSitePatterns | Zinc finger RanBP2-type signature. | 217 | 236 | IPR001876 | - | |
Cca04g00315 | 742 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 13 | 99 | IPR000504 | GO:0003723 | |
Cca04g00315 | 742 | CDD | RRM_SARFH | 15 | 97 | - | - | |
Cca04g00315 | 742 | SUPERFAMILY | Ran binding protein zinc finger-like | 209 | 243 | IPR036443 | - | |
Cca04g00315 | 742 | SMART | rrm1_1 | 14 | 95 | IPR000504 | GO:0003723 | |
Cca04g00315 | 742 | PANTHER | ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED | 1 | 370 | - | - | |
Cca04g00315 | 742 | MobiDBLite | consensus disorder prediction | 468 | 491 | - | - | |
Cca04g00315 | 742 | PANTHER | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 | 1 | 370 | - | - | |
Cca04g00315 | 742 | SUPERFAMILY | Ran binding protein zinc finger-like | 144 | 181 | IPR036443 | - | |
Cca04g00315 | 742 | SUPERFAMILY | RNA-binding domain, RBD | 10 | 102 | IPR035979 | GO:0003676 | |
Cca04g00315 | 742 | Pfam | Zinc finger, C3HC4 type (RING finger) | 586 | 615 | IPR018957 | GO:0046872 | |
Cca04g00315 | 742 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 15 | 92 | IPR000504 | GO:0003723 | |
Cca04g00315 | 742 | SMART | zf_4 | 215 | 239 | IPR001876 | - | |
Cca04g00315 | 742 | SMART | zf_4 | 151 | 177 | IPR001876 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g00315 | Cca-Chr4 | 3036974 | 3055380 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g00315 | 450 | 617 | C3H Transcription Factor Family | AT5G48655 | 48.000 | 7.52e-31 | 118 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g00315 | - | - | gmx:100780819 | 560.836 |