Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00295 ATGTCGCGCCAGACGACGTCGTCTGCCTTCACCAAATCCAAAACCCTCGACAACAAATATATGCTGGGAGATGAGATTGGAAAAGGAGCTTATGGTCGAGTTTACAAGGGTTTGGACCTGGAGAATGGAGATTTTGTTGCCATTAAACAAGTTTCTTTGGAGAATATTGCTCAGGAGGATCTCAACATCATCATGCAAGAGATTGACTTGTTAAAGAATTTGAACCACAAAAACATTGTGAAGTATCTTGGATCTTCAAAGACAAAAAGTCACCTGCACATAGTTCTTGAGTATGTGGAGAATGGCTCACTTGCAAATATTATCAAGCCAAATAAATTTGGACCTTTCCCAGAATCATTGGTTGCAGTATATATCGCCCAGGTGTTGGAAGGTTTGGTTTATCTACATGAACAAGGTGTTATCCATAGGGATATTAAGGGTGCAAACATATTGACAACTAAAGAGGGTCTTGTCAAACTTGCTGATTTTGGTGTTGCAACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACGCCTTACTGGATGGCCCCAGAGGTTATAGAAATGTCTGGGGTTTGTGCAGCTTCTGACATTTGGAGTGTTGGCTGTACAGTTATTGAACTTCTTACATGTGTACCTCCTTATTATGATTTGCAGCCTATGCCGGCTCTTTTCCGTATTGTCCAGGATGAGCATCCACCAATTCCAGATAGCCTTTCACCCGATATTACTGATTTTCTGCTTCAATGTTTTAAGAAGGATGCTAGACAAAGGCCGGATGCTAAAACTTTGCTGTCTCACCCCTGGATTCAGAATTGTAGACGAGTTCTGCAGTCTTCTCTTCGTCATAGTGGAACACTAAGAAATATAGAGGGAGATGATTCTGCAGATGCAGAAGTTTCTATGGAGAAAGAGGACTCTACGAAAGATCTTACAACTGTGGTTGCTCATAGCAGCAAATCTCCTGAAGACAATGCTTCAGATTCTAATTTCCCCAACAATAGAACAGAGAAAGCAGATGATGTTCCATCAGATCAGGTTCTTACTCTAGCCATTCATGAGAAGTCATTTCTACAAACTGATTCTAGCAATCTCTCTTCTAATAGAGAAGTGGTTAGTTCCGATCCTACTGGCAATCTTGAAAGTTCAAATGCTAAAGACCTTCATGAAGTTACGATGAATGGAGAGGTTGGATCTCCACAATCAAGAGTAACGGCTAGTAAGGTTGGAGGAAAAGACAATTCTGTAAACAATGGCAACAAATCATTTGCTTTTGGACCAAGAGGTCAAGATAATGATTCCCTTAAGGCAATGAAGATGCCAACCACTGTAGAAGGAAATGAGCTGAGTAGATTTAGTGACCCGCCAGGAGATGCCTACTTAGATGATTTATTTCATCCATTGGATAAACAACCTGGGGAGGTTGTAGCAGAGGCGTCGACTTCTACATCCACTTCACATATAGCTAAAGTTAATGTATCTACAAATGATGGTGGGAAGAATGACCTGGCTAAAGAGCTGAGGGCTACAATTGCTCGAAAGCAATGGGAGAAGGAAAGTGAAATTGGACAGGCAAACAATGGTGGGAATCTTTTGCACCGAGTGATGATAGGTGTTCTAAAAGATGATGTGATTGATATAGATGGTTTGGTCTTCGATGAAAAACTTCCTGGAGAGAACCTTTTTCCTTTACAGGCTGTTGAGTTTAGCAAACTAGTCGGTTCATTAAAACCAGAGGAATCAGAGGATGTGATTGTTTCTGCATGTCAGAAGCTTATTGGTATATTTAACCAACGTCCAGAGCAGAAGATTGTTTTTGTTACCCAGCATGGTTTACTTCCTCTAACAGACTTGCTGGAAGTTCCTAAAACACGTGTCATATGTTCTGTGCTTCAGCTTATAAATCAAATAGTTAAAGACAACACAGATTTTCTAGAAAATGCATGTCTTGTTGGATTGATTCCTGCAGTCACAAGCTTTGCAGTACCTGATCGTCCTCGAGAGATTCGTATGGAATCAGCTTATTTTTTGCAGCAACTTTGTCAGTCAAGTTCTTTGACATTACAAATGTTTATAGCTTGCCGTGGAATACCAGTTTTAGTGGGATTTCTTGAGGCTGATTATGCTAAGTACAGGGAAATGGTTCATCTGGCTATTGATGGCATGTGGCAGGTATTTAAGCTTCAGCAGTCAACGCCTAGAAATGATTTTTGCCGGATAGCTGCTAAAAATGGAATACTTCTCAGGCTTATAAATACTCTATATAGCTTAAATGAGTCAACTAGACTAGCTTCCTGCTCTGCTGGGGGTGGATTTTCAGTTGATGGTTCAGCTGTACGCTCACGATCTGGTATCTTGGATCCTACACACCCTTATATCAATCAGAATGAGGCAGTTCTATCTTCAGTAGATCAGCTAGACCCGGCTAAAGTGAGACGCGGAGTACCTGATCATCACTTAGAACCTTCACAACCTTCATCCTCCAATCCTCGGAGATCAGATGCTAACTACCCCGTGGATGTTGATAGACATCAATCAAACAATATGGCAGCTGATATTATGTCACTGGACAAGAGTTCGACCCAAACTTCCAGAGAATCTTCAGCAGGTGTATTGAAAGAGCGAGAGAATATTGAATCCAGACAGCAACGTATTTCTACTAATAGGACATCAACTGATAGGCCACCAAAATTAACAGAACCATCATCAAATGGGTTAACAGTAACAGGAATTACACACCAAGAGCAAGTTAGGCCTCTTCTTAGCTTGTTGGATAAAGAACCCCCTTCTGGACGCTTTTCTGGACAGCTCGAGTATGTACGTCAGTTTTCAGGATTAGAAAGACATGAAAGTGTAGTCCCTTTGTTACATGCCTCTGAAAAGAAAACAAATGGTGAACTAGACTTTTTAATGGCAGAATTTGCAGATGTTTCTCAACGTGGAAGGGAAAATGGAAATCTTGACTCCGGTGCTAGAGTGTCTCATAAAGTCACTCCCAAGAAATTAGGGACTTTGGGTTCCAGCGAAGGAGCTGCTTCCACATCTGGGATTGCCTCGCAGACAGCATCAGGTGTACTGTCTGGTTCAGGTGTTCTAAATGCTAGACCAGGTAGTGCTACTTCGTCTGGGCTACTTTCCCACATGGTTTCATCACTGAATGCAGAACTTGCCAGAGAGTATCTGGAGAAAGTGGCAGATCTTCTGCTTGAGTTTGCACAAGCAGACACAACAGTGAAATATTTCATGTGTAGCCAAAGCTTGCTCAGTCGGCTTTTCCAGATGTTTAATAGGGTGGAGCCTCCTATTTTGTTGAAGATACTGAAGTGTATTAATCATCTGTCAACTGATCCAAATTGCTTAGAAAATCTTCAGCGTGCTGAAGCAATTAAATACTTGATACCAAATCTTGAACTCAAAGAAGGGTCCCTTGTTTCAGAGATACATCATGAGGTGTTGAACGCACTATTCAATTTATGCAAGATAAATAAGAGGAGACAAGAACAAGCAGCTGAAAATGGAATCATTCCCCATTTGATGCAATTCATCACATCAAATTCTCCCTTGAAACAATATGCATTGCCACTGTTATGTGACATGGCTCATGCATCTCGCAATTCAAGGGAGCAGTTAAGGGCTCATGGTGGTTTGGATGTCTATTTGAACCTTCTTGAGGATGAGATCTGGTCTGTTACAGCACTAGATTCTATTGCTGTTTGTTTAGCCCATGATAATGACAACAGGAAGGTTGAACAATCATTGCTGAAAAAGGATGCAGTTCAAAAGCTTGTGAAGTTCTTCCAGTGCTGTCCAGAGCAGCATTTTGTACACATATTGGAGCCATTCTTGAAAATCATCACAAAATCTGCAAGGATCAATACCACATTGGCTGTTAATGGATTAACGCCATTGCTCATTGCAAGGCTAGATCATCAGGATGCTATAGCTCGTCTTAATTTGCTCAGGCTAATAAAGGCTGTTTATGAGCATCATCCTCAGCCCAAGAAGTTGATTGTGGAAAATGATCTGCCTGAAAAACTTCAAAACTTAATAGGGGAACGGAGAGATGGGCAAGTGTTGGTCAAACAGATGGCTACGTCATTACTTAAAGCACTACACATAAACACCGTTttgtaa 4146 0.411 MSRQTTSSAFTKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSSKTKSHLHIVLEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDEHPPIPDSLSPDITDFLLQCFKKDARQRPDAKTLLSHPWIQNCRRVLQSSLRHSGTLRNIEGDDSADAEVSMEKEDSTKDLTTVVAHSSKSPEDNASDSNFPNNRTEKADDVPSDQVLTLAIHEKSFLQTDSSNLSSNREVVSSDPTGNLESSNAKDLHEVTMNGEVGSPQSRVTASKVGGKDNSVNNGNKSFAFGPRGQDNDSLKAMKMPTTVEGNELSRFSDPPGDAYLDDLFHPLDKQPGEVVAEASTSTSTSHIAKVNVSTNDGGKNDLAKELRATIARKQWEKESEIGQANNGGNLLHRVMIGVLKDDVIDIDGLVFDEKLPGENLFPLQAVEFSKLVGSLKPEESEDVIVSACQKLIGIFNQRPEQKIVFVTQHGLLPLTDLLEVPKTRVICSVLQLINQIVKDNTDFLENACLVGLIPAVTSFAVPDRPREIRMESAYFLQQLCQSSSLTLQMFIACRGIPVLVGFLEADYAKYREMVHLAIDGMWQVFKLQQSTPRNDFCRIAAKNGILLRLINTLYSLNESTRLASCSAGGGFSVDGSAVRSRSGILDPTHPYINQNEAVLSSVDQLDPAKVRRGVPDHHLEPSQPSSSNPRRSDANYPVDVDRHQSNNMAADIMSLDKSSTQTSRESSAGVLKERENIESRQQRISTNRTSTDRPPKLTEPSSNGLTVTGITHQEQVRPLLSLLDKEPPSGRFSGQLEYVRQFSGLERHESVVPLLHASEKKTNGELDFLMAEFADVSQRGRENGNLDSGARVSHKVTPKKLGTLGSSEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSSLNAELAREYLEKVADLLLEFAQADTTVKYFMCSQSLLSRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRAEAIKYLIPNLELKEGSLVSEIHHEVLNALFNLCKINKRRQEQAAENGIIPHLMQFITSNSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLNLLEDEIWSVTALDSIAVCLAHDNDNRKVEQSLLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSARINTTLAVNGLTPLLIARLDHQDAIARLNLLRLIKAVYEHHPQPKKLIVENDLPEKLQNLIGERRDGQVLVKQMATSLLKALHINTVL 1381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00295 1381 MobiDBLite consensus disorder prediction 985 1018 - -
Cca04g00295 1381 PANTHER MAP KINASE KINASE KINASE 2 1340 - -
Cca04g00295 1381 Gene3D - 565 777 IPR011989 -
Cca04g00295 1381 PRINTS Tyrosine kinase catalytic domain signature 96 109 IPR001245 GO:0004672|GO:0006468
Cca04g00295 1381 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672|GO:0006468
Cca04g00295 1381 PRINTS Tyrosine kinase catalytic domain signature 200 222 IPR001245 GO:0004672|GO:0006468
Cca04g00295 1381 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Cca04g00295 1381 Gene3D - 1036 1378 IPR011989 -
Cca04g00295 1381 MobiDBLite consensus disorder prediction 825 872 - -
Cca04g00295 1381 MobiDBLite consensus disorder prediction 887 911 - -
Cca04g00295 1381 MobiDBLite consensus disorder prediction 817 911 - -
Cca04g00295 1381 SUPERFAMILY ARM repeat 1059 1374 IPR016024 -
Cca04g00295 1381 SUPERFAMILY Protein kinase-like (PK-like) 17 275 IPR011009 -
Cca04g00295 1381 MobiDBLite consensus disorder prediction 291 346 - -
Cca04g00295 1381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Cca04g00295 1381 MobiDBLite consensus disorder prediction 364 438 - -
Cca04g00295 1381 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Cca04g00295 1381 CDD STKc_Cdc7_like 19 274 - -
Cca04g00295 1381 SMART arm_5 603 643 IPR000225 GO:0005515
Cca04g00295 1381 SMART arm_5 1166 1205 IPR000225 GO:0005515
Cca04g00295 1381 SMART arm_5 1120 1164 IPR000225 GO:0005515
Cca04g00295 1381 MobiDBLite consensus disorder prediction 316 337 - -
Cca04g00295 1381 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00295 1381 MobiDBLite consensus disorder prediction 364 431 - -
Cca04g00295 1381 Pfam Protein kinase domain 21 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g00295 1381 MobiDBLite consensus disorder prediction 291 315 - -
Cca04g00295 1381 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 1340 - -
Cca04g00295 1381 Gene3D Transferase(Phosphotransferase) domain 1 17 316 - -
Cca04g00295 1381 SUPERFAMILY ARM repeat 574 772 IPR016024 -
Cca04g00295 1381 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00295 Cca-Chr4 2849975 2870338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00295 1 1381 MAP Kinase Kinase Kinase AT3G13530 72.031 0.0 1979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Cca04g00295 Pkinase 3.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00295 - - gmx:100813256 2484.14