Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00294 ATGTACTTGAGGAGAATACAGTGCAGAGATAGGACATGGGCTTTGGTGTTGCAGCCATCAAAATACTTCTTTAGGCCAAGATTCTATGATCATCCATACTTTCAATCTTTGTCCCCTAAGATCACTGTGAAAGAATATTCTTCACATGGCAGGATCATCAGAAAACATCTTTTAGGTTCTGATTCATGTAGGCATACTTCATCTAGAAATAGTTTCACTGGTCTGGATAAAAGGCCTAGTTTATGTCTTAATGGTACTCAGTTACGTTCCTATAGTTCTGAAGGTGATGGAAGAAATGCAAGTGAGGATAATCATGTACATGTTAGTGATGGAGCTAACTTTGATAAAGGAGAGAATCAAAAAGAGAAGTTTGGGAAAGATATCGAGCACTGCAATGCACATACACGACTTGGAGAACAGGAACAAGAGGAATGGCTTAATAATGAGAAGCTTTCTATAGAAAGTAAAAAGAGAGAATCACCATTTTTGACAAGAAGGGATAAGTTTAAAAATGAGTTTATGAGAAGAATTATTCCTTGGGAGAAAATAAACATTTCCTGGGAGACATTTCCTTACCATATTAATGAGCATTCAAAAAATCTTCTGGTGGAATGTGCTGCTTCCCATTTGAGACAAAATAAGTTTGCTTCATCTTTTGGCACTCACCTCCCATCATCAAGTGGGAGAATATTGCTTCAGAGCATTCCTGGGACTGAGCTGTATCGGGAGAGATTGGTTAGAGCTCTTGCACAAGATTTACAAGTTCCTCTGTTAGTGCTTGATAACAGCATTCTTGCGGCTTATGATATTGACGATGATTTATCATCAGATTATGATTCTGATGAAGATAATGCAGAGTCTGGGGAGGAGGGTTCTCTGGAATCGGAGAATGAGGTTGATAATGATGCTAGCAATGAAGAAGAGTGGGCTAGCAGTACTGAGGCGAAGTCAGATGCAAGTGATAATGAAGATGCAATAGCATCTGCTGAAGCTCACCTTAAGAAGGTTAAAGCAGCTGTTCTTCGGAAACTTGTCCCTTACAATGTTGAAGAATTTGAAAAGATAGTGTCTGGAGAATCCGAGAGTTCTGAGTCATCCAAGTCGAATGATGCCGAATCTTCTGATAAATGTGAATGCCAGCTAAAAAAAGGTGACCGTGTGAAGTACATTGGGCCATCTGTTCAAGTTACAGATGAGGATAGGATCATACTGGGGAAGATACTGACATCTGATGGTCCAACTAGTGCATATACTATTATACATGGCAGGCCATTAGCTAAAGGTCAGAGAGGAGAGGTATATGAGGTTAATGGAGATCGAGTTGCTGTGATCTTGGATATTAATGAAGATAAGGTCAAGGAGGGCGAAGCGGAAAACCTAAATGATGATCGTACAAAACCTCCAATTTATTGGATACATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACAGGATTGCTACATAGCAGTGGAGGCCTTATGTGAGGTTTTGCATTGCAAACAACCTCTTATTGTCTATTTTCCAGACAGTTCACAATGGTTACATAAATCAGTTCCCAAGTCAAACCGAAATGAGTTTTTTCGTAAGGTTGAGGAGATGTTTGACCGGTTGTCTGGCCCTATAGTATTGATTTGTGGGCAAAACAAAGTTCAGTCAGGATCAAAGGAGAAAGAACAATTCACAATGATACTTCCAAATTTTGGACGTGTCGCTAAGCTGCCTCTTTCTCTGAAGCGTTGGACTGAGGGAATAAAAGGGGACAAAACATCAGATGATGATGAAATTAACAAGCTCTTCTCCAATGTTTTGAGTATACATCCACCGAAGGATGAGAATCTGCTGGTAACATTCAAGAAACAACTTGAGGAAGATAAGAAAATTGTGACATCACGTAGTAATTTGAATGTATTACGGAAGGTTCTTGAAGAACATCAGTTATCATGCATGGACCTTTTGCATGTAAATACTGATGGCATCATTTTGACGAAGCATAAAGCTGAAAAAGTGATTGGCTGGGCAAAAAATCATTATTTGTCGTCATGCTTGCTTCCATCTGTTAAAGGAGAAAGATTGTGCCTACCTCGTGAAAGTCTTGAAATTGCAGTCTCAAGATTGAAGAGCCAGGAAACTATCTCACGGAAGCCTTCTCAAAGCCTCAAGAACCTTGCAAAGGATGAGTTTGAGAGCAATTTCATTTCAGCTGTAGTACCTCCTGGTGAAATTGGGGTGAAGTTTGATGACATAGGTGCTCTTGAAGACGTGAAAAAGGCACTTAATGAACTCGTTATTCTTCCAATGAGAAGGCCAGATCTTTTCTCTCATGGAAATCTGTTGCGGCCCTGTAAGGGAATATTACTTTTTGGTCCTCCTGGCACTGGGAAAACCCTTTTGGCTAAGGCACTTGCGACTGAAGCTGGTGCAAATTTTATTAGCATAACTGGTTCGACCCTTACTTCAAAGTGGTTTGGAGATGCTGAAAAACTAACCAAAGCACTCTTTTCGTTTGCCAGCAAGCTTGCTCCTGTCATTATTTTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTTCGAGCATGAGGCCACTAGAAGAATGAGGAATGAGTTCATGGCAGCTTGGGATGGATTAAGGTCAAAAGAAAATCAAAGAATCCTTATTCTTGGTGCCACTAACAGGCCATTTGACCTTGATGATGCTGTTATTCGTCGCTTACCAAGAAGGATATATGTTGATTTACCAGATGCTGAAAATCGAATGAAGATTTTAAGAATCTTTCTTGCACAAGAAAATTTGGATTCAAATTTTCAGTTTGACAAACTAGCTAACTTGACTGATGGATACTCTGGCAGTGATTTGAAGAACCTCTGTATTGCTGCGGCATATAGACCTGTTCAAGAACTCTTAGAGGAAGAAAAGAAGGGAGCCAGTGAGGGTACAACTTCAGTACTAAGGCCTCTTAATGTGGATGATTTTATTCAGGCAAAATCCAAGGTGGGTCCATCAGTTGCGTATGATGCAACAAGCATGAATGAGTTGAGGAAGTGGAACGAAATGTACGGAGAAGGCGGTAGTAGGACAAAATCACCTTTTGGATTTGGGACTTGA 3120 0.4019 MYLRRIQCRDRTWALVLQPSKYFFRPRFYDHPYFQSLSPKITVKEYSSHGRIIRKHLLGSDSCRHTSSRNSFTGLDKRPSLCLNGTQLRSYSSEGDGRNASEDNHVHVSDGANFDKGENQKEKFGKDIEHCNAHTRLGEQEQEEWLNNEKLSIESKKRESPFLTRRDKFKNEFMRRIIPWEKINISWETFPYHINEHSKNLLVECAASHLRQNKFASSFGTHLPSSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDNSILAAYDIDDDLSSDYDSDEDNAESGEEGSLESENEVDNDASNEEEWASSTEAKSDASDNEDAIASAEAHLKKVKAAVLRKLVPYNVEEFEKIVSGESESSESSKSNDAESSDKCECQLKKGDRVKYIGPSVQVTDEDRIILGKILTSDGPTSAYTIIHGRPLAKGQRGEVYEVNGDRVAVILDINEDKVKEGEAENLNDDRTKPPIYWIHVKDIENDLDAQSQDCYIAVEALCEVLHCKQPLIVYFPDSSQWLHKSVPKSNRNEFFRKVEEMFDRLSGPIVLICGQNKVQSGSKEKEQFTMILPNFGRVAKLPLSLKRWTEGIKGDKTSDDDEINKLFSNVLSIHPPKDENLLVTFKKQLEEDKKIVTSRSNLNVLRKVLEEHQLSCMDLLHVNTDGIILTKHKAEKVIGWAKNHYLSSCLLPSVKGERLCLPRESLEIAVSRLKSQETISRKPSQSLKNLAKDEFESNFISAVVPPGEIGVKFDDIGALEDVKKALNELVILPMRRPDLFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAQENLDSNFQFDKLANLTDGYSGSDLKNLCIAAAYRPVQELLEEEKKGASEGTTSVLRPLNVDDFIQAKSKVGPSVAYDATSMNELRKWNEMYGEGGSRTKSPFGFGT 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00294 1039 Gene3D - 745 1021 IPR027417 -
Cca04g00294 1039 Pfam ATPase family associated with various cellular activities (AAA) 786 916 IPR003959 GO:0005524|GO:0016887
Cca04g00294 1039 CDD AAA 784 917 - -
Cca04g00294 1039 MobiDBLite consensus disorder prediction 275 307 - -
Cca04g00294 1039 Pfam AAA+ lid domain 940 974 IPR041569 -
Cca04g00294 1039 MobiDBLite consensus disorder prediction 92 116 - -
Cca04g00294 1039 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 1037 - -
Cca04g00294 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 1006 IPR027417 -
Cca04g00294 1039 MobiDBLite consensus disorder prediction 275 323 - -
Cca04g00294 1039 SMART AAA_5 782 919 IPR003593 -
Cca04g00294 1039 MobiDBLite consensus disorder prediction 309 323 - -
Cca04g00294 1039 Gene3D - 918 1003 - -
Cca04g00294 1039 MobiDBLite consensus disorder prediction 96 116 - -
Cca04g00294 1039 MobiDBLite consensus disorder prediction 356 377 - -
Cca04g00294 1039 ProSitePatterns AAA-protein family signature. 889 908 IPR003960 GO:0005524|GO:0016887
Cca04g00294 1039 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1037 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00294 Cca-Chr4 2823687 2848961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00294 745 977 Calmodulin-binding Proteins AT3G56690 38.559 1.11e-40 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00294 - - gmx:100802939 1813.51