Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00293 ATGGGCAAGTCAAGCAAGAACTCAGCTCTCAAGGTTGATGCTGCTCCAGCTGTGGTTCCCCTGTCGAAGTCTGCCAAGAAGGGTGGCAAGAGGCAAGCTGAAGAAAAAATTCAGAAGCAAGTAAGTGCTAAAAAGCAGAGGACAGAGGAGGTTGCTCAGAAGCAGAAGAAGGAAGCCAAGGTGCAAAAGAAGGAAACTAGTTCAGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCATCCAAACCTGTTGTTATTTCAAAGAAGATACCTGCTAAGAATGGTGCTGCAAAAGCACCAGCAAAAAAAGGCAAGCCATTGTCCAGTTCTTCTGAATCATCTGATGATGACTCCTCTGATGAGGATGAAGTGATTGCAAAGAAGCCACTGAAAGAAGTGGTTTCAGGGAAACAAAAGAAGGAAGCATTGGTGCAAAAGAATAAGAACGAAAGTAGTTCAGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCAGCAAAAGCTCCTCTACCTTCTAAGAAAATACCTGTGAAAAATGGAAATATAAGTAGCTCTGCTAAGATAGCCAAGCCAGCTAGCAGCTCTAGTTCTGAATCATCTGAAGATTCTTCATCGGAATCCGAAGACGAGAAACCTGCGACCAAAGTTGCTGTTCCTTCACAAAATCAGTCTGCAAAAAATGGTGGTACCCTAGCAAAGAAAGGCAAGCCAGCTGCCAATTCAACCACTTCTGAATCATCTGATGACGACTCTGATGAAGATGAGGCCCCAAAATCCAAGGTGGTTCCTGCACTAGCCAAGAATGGACTTGCTTCCACAAAGAAACCTGATAGCTCAGACTCAGACTCTGATAGTAGTTCTGATGAGGATGATAATAAAAAAAAACCAGCAACTTCAAAGCTGCCTGCACCATCAGTTACTCCAACTAAGAAAGTGGAAAGCTCAGATGATGAATCTAGTGATAGCTCTGATGAAGATGATGATGCAAACCCTGCAGTAGCTGTTGTGTCAAAACCTTCTGCTGCTGCAAAAAAGAATGTTGACAGCTCTGATTCTGATGATAGCAGCTCTGGTGATGACAATAAAAAGGATGTTAAAACTGTTTCTATTGCCAAGCCAGTGCCTGTTTCTAAGCAGCATGTGAAGAAGTCAAGTAGTAGTGATTCAGATGAAGAGGACTCTTCTGATAGCGACTCTGAGGATGAAAAGAAGAATGTTAAAGTTTCTAATGTTAACAAGGAAGCAGCACCTGTTGTGAAGACACCTAAAAATGTGTCTAGTGAAGATTCATCAGAGAGTGATTCTTCAGACGATGAGGGGAAGATGGATGTTGACAAGGATGGTAGTTCTGATGAAAGTGAGGAGCCAAAAAAGAAAAAGACTGTGAAAGATTCAAAAGAAAGCATTGATAGTTCTGATGATAGTGAGGAGGAAAGTGAGGATGAACCCTCCAAAACTCCTCTGAAAAGTGCAAGGGATGTCGAGATGATTGATGCTGCCACTCCTAAAACCCCAGCTACACCAAAAGATGAAAGTGGTGCTTCGAAAACACTATTTGTTGGAAACTTGCCATTCAGTGTTGAACGAGCTGATGTGGAAAATTTCTTCAAAGATTGTGGAGAAGTTGTTGATGTTCGTTTCGCTTCAGATAGTGATGGGAGGTTTAAAGGGTTTGCACATGTTGAGTTTGCAACAGCAGATGCTGCTCAGAATGCCCTTGCGTTGAATGGCTACGAATTGTTTAATCGTGCACTTCGGCTTGATTTAGCTAGGGAAAGGGGAGCACAAACCCCCAACAGCAGCAACTGGAACAATTCATCCCAGAAAAGTGGAGGTCAGTCACAGACTGTATTTGTGAGGGGTTTTGATAAGTCCCTTGATGAAGATGAGTTAAGAGCTAGTTTGCAAGAACATTTTGGTTCTTGTGGGGATATTAAAAGGGTATCCATTCCAAAAGATTACGACTCTGGTGCTTTTAAGGGGTTTGCTTACGTGGAATTCAGTGATGCTGATGCCACTAGCAAAGCTCTAGAACTTCATGAAACTGAACTGGGAGGTTATACCTTGTCAGTGGATGAGGCAAAATCCAGAGATAATCAAGGATCTGGTGGTAGAGGTGCAGGTGGTAGGAGTGGTGGCCGATTTGGTGGAAGGGGTGGTCGATTTGGTGGAGGCAGTGGTGGGCGATTTGGTGGTGGCGGTGGAAGGGGTGGTGGAGGAAGAGGTGGTCGAGGAAGAGGTGGTGGCGGAAGGGGCCGTGGAACCCCATATAACAGACCTAATCTTGCTGCGGAAGGCACAGGGAAGAAAACCAAATTTGCTGATGATTAG 2337 0.4382 MGKSSKNSALKVDAAPAVVPLSKSAKKGGKRQAEEKIQKQVSAKKQRTEEVAQKQKKEAKVQKKETSSDDSSSESEDEKPASKPVVISKKIPAKNGAAKAPAKKGKPLSSSSESSDDDSSDEDEVIAKKPLKEVVSGKQKKEALVQKNKNESSSDDSSSESEDEKPAAKAPLPSKKIPVKNGNISSSAKIAKPASSSSSESSEDSSSESEDEKPATKVAVPSQNQSAKNGGTLAKKGKPAANSTTSESSDDDSDEDEAPKSKVVPALAKNGLASTKKPDSSDSDSDSSSDEDDNKKKPATSKLPAPSVTPTKKVESSDDESSDSSDEDDDANPAVAVVSKPSAAAKKNVDSSDSDDSSSGDDNKKDVKTVSIAKPVPVSKQHVKKSSSSDSDEEDSSDSDSEDEKKNVKVSNVNKEAAPVVKTPKNVSSEDSSESDSSDDEGKMDVDKDGSSDESEEPKKKKTVKDSKESIDSSDDSEEESEDEPSKTPLKSARDVEMIDAATPKTPATPKDESGASKTLFVGNLPFSVERADVENFFKDCGEVVDVRFASDSDGRFKGFAHVEFATADAAQNALALNGYELFNRALRLDLARERGAQTPNSSNWNNSSQKSGGQSQTVFVRGFDKSLDEDELRASLQEHFGSCGDIKRVSIPKDYDSGAFKGFAYVEFSDADATSKALELHETELGGYTLSVDEAKSRDNQGSGGRGAGGRSGGRFGGRGGRFGGGSGGRFGGGGGRGGGGRGGRGRGGGGRGRGTPYNRPNLAAEGTGKKTKFADD 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00293 778 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 340 720 - -
Cca04g00293 778 SMART rrm1_1 519 590 IPR000504 GO:0003723
Cca04g00293 778 SMART rrm1_1 618 694 IPR000504 GO:0003723
Cca04g00293 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 617 698 IPR000504 GO:0003723
Cca04g00293 778 SUPERFAMILY RNA-binding domain, RBD 613 730 IPR035979 GO:0003676
Cca04g00293 778 PANTHER BNAA08G02930D PROTEIN 340 720 - -
Cca04g00293 778 Gene3D - 601 733 IPR012677 -
Cca04g00293 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 619 691 IPR000504 GO:0003723
Cca04g00293 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 520 588 IPR000504 GO:0003723
Cca04g00293 778 MobiDBLite consensus disorder prediction 1 517 - -
Cca04g00293 778 MobiDBLite consensus disorder prediction 27 84 - -
Cca04g00293 778 MobiDBLite consensus disorder prediction 349 369 - -
Cca04g00293 778 MobiDBLite consensus disorder prediction 597 616 - -
Cca04g00293 778 SUPERFAMILY RNA-binding domain, RBD 508 613 IPR035979 GO:0003676
Cca04g00293 778 MobiDBLite consensus disorder prediction 179 203 - -
Cca04g00293 778 MobiDBLite consensus disorder prediction 122 170 - -
Cca04g00293 778 CDD RRM1_NUCLs 519 595 IPR034349 -
Cca04g00293 778 Gene3D - 420 600 IPR012677 -
Cca04g00293 778 MobiDBLite consensus disorder prediction 692 778 - -
Cca04g00293 778 MobiDBLite consensus disorder prediction 279 299 - -
Cca04g00293 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 518 594 IPR000504 GO:0003723
Cca04g00293 778 MobiDBLite consensus disorder prediction 439 472 - -
Cca04g00293 778 CDD RRM2_NUCLs 618 696 IPR034350 -
Cca04g00293 778 Coils Coil 30 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00293 Cca-Chr4 2813019 2819287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00293 506 680 Eukaryotic Initiation Factors Gene Family AT1G22760 28.409 6.32e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00293 K11294 - gmx:100786132 537.339