Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00289 ATGGTAAATCATGTTGGTGTGTCTAAGACCAAGTGTacgtacgacgttttccttaattttagaggtgaagatgtccgtcgcacattcatttgtcatctctatcaagctttggatcggaagggaattgccaccttcatggacaataaggagctcaagtatggagatgaacttagccctacgcttcttaaagccatcgaagaatcaaggatctccattgttgttttctctaaaaattatgcggcctcttcatggtgccttgatgaacttgttaagatccatgagtgtatcaagtcaaagaagcagcaggtttggccaatcttctacaaaatggatcccgcgaatgtgaggcatcagaaaggaagttatggtcaggccatgactaagcatgaaacaaggcacggaaaagacccggagaagctgcacaaatggagattggccttgacttacgtagccaacttaaaaggacaacatttgacacaagggacaaatgaagccaattttattgaggatcttgtaagcaagattttcaataaagtatctcctaaagatttatctagatatgaacatatagttgggcggaagtatctagttgaagaattgaagttacttctagatcttgagtctcataatatcacttgcctactagggatttatggaacaggtggaattggcaaaaccacacttgccaaagctctgtatgactccatttacaagcaatttgagggttcaagttttctttccaatgtcagagaaaagtcaaaacaaattaagggcttagaattattgcaaaaaagtcttttgtcagatatacttgaggtagaggaaagcaaaatccaagtgaaaaatattgaagaaggaattataacaataaaaagtagacttgattttaaaagagttcttataattcttgatgatgttgatgacattaaacagatgtatagtttggcaagagaacacgattggtttggtcttgggagcagaatcatcataaccacgagagatcaacatttgctagatgttggcaggatcaaaaagaaatatgaagtgaaagtgctaaaccatccagagtctctggagctcttttgtcaaagcgtctttagaaaaaattatcctaaatcaaactataaagatctgtcccaccgcgcaattcgttgttgcaaaggccttccattggccttaaaagtattaggttgtcatttggttggaaaagatttgagtggatggaatgatgcattggacaaatatgaaaaaagtccacatgaagatgttcaaaaagttcttagaataagctatgatagcctgtccttaaatgaaaaggatattttccttgacattgtatgcttcttcaatgggtggaaattgaaacaagcaaaagaagtactagatgcgtgtgatttcaactcaggagatggtattacaacattagttaataaatctcttttaactattgacaacaaatacttgcatatgcatgacctaatacaggccatgggtaaatacattgttaaagaggaagcatggaatgaatttggtgaacgtagcagattatggcatcatgaagatgtTCTTCAAGTATTAGCTGATAATAATGGAAGTGGCAAAATTCAAGGCATAATCCTGGATCCCCCTCAAAGTGAAGAAGTTAATTGTACTCCTACTGTATTTAAGAAGATGGGAAATCTTAGAATCCTAATTGTTCGTAATACAAAGTTTTTATGCAAGCGTTGTTATCTCCCAAATAACTTAAAGCTACTTTACTGGGAGAATTATCCTTCTCCATCTTTCCCATCAGATTTTTATCCCAGGAAAATTGTGACCTTCCATTTATGTGAAAGTCCTTCACTTGTACTAAAAAAGCCATTTAAGAAATTTGAGCATTTGACTTGCATTTGTATCTCCTCTTGTTGTAAGGTTACTGAATTTCCTGATGTGTCTGGAGCCATGAATTTAAGAGAGTTGAGACTTGATAGATGCGAGAACCTGGTTAGTATACATGAATCAGTTGGATATCTTACAAACCTTGTTTCCATACAGGTTTTAGGATGCACTAAACTCCAAAGTTTTGTGCCAACAATCTATTTGCCATCTCTCGAAAACCTTTGCTTTAGCTTGTGTACAAAACTCACTTACTTCCCAGAGATCAGGGAGATGATGGATAAGCCTTTAAAGATTATAATGATGGATACATCAATTACGGATCTTCCAGAATCCGTTGAGAAACTTATTGGGCTTAAACTTATTGACATGACAGGTTGTAAGGAACTGCGACATTTACCAAGTAGCTTATTTATGTTGCCAAATTTTGTTACATTAAAAATTGGAAAATGTCATGGACTTCGAGAGTCATTTAGAAGGTTTCAAGGAAGCCATTCAACATGCCCAAAACTAGAGACATTAGATTTCTGCGATGCTGATCTATCAGAAAGAGATCTTTCAACGATTATTTACAATTTTCCAAACTTGAAAGATTTAATTGTTTCGCAGAACAATTTTGTGTCTCTCCCAGCAGATATTATAAAATCTACTAAATTGGCAAGTCTTGACGTGAGTAGTTGTGAGAAGCTTGAAGAAATTTCAGAACTTCCATCAAGTATTGAGAAAGTAGATGCAAGAGAATGTAATTCCTTAACTTGGGAGACATCAAACATGTTATGGTCTCAGGTGCGTAAAGAGATGAAGAGATTACATGTGGTGATGCCAAATCCAAAAAGAGAGATTCCAGAATGGTTTGACTATGTTAAGGAGGGAGGGTATCCGGTCTTCGAGGTTCGTGGGAAGTTCCCTGCAGTTGCTTTAGCGTTTGTGTTCGGGGAAGTGGTTGCCAATGTTAACCGACTATTGTCATCTGTTCACATGCACTTGATCATTGATGGTGAACGCAAAGGGTACCGTAAGTTCTCTGTGAATGAGAATCATGTGTTGTTGTACGACCTACCAAATTTGTTCGGTTTGGAGGAGCGGGATGTAGGTAATGATTGGAAGACCATAATGATTTGTTGCAAAACAAACTTGAGTCTATGTTCATGGGGAGTTTATGCGTACAACCAGGGTATCCGGTTCCCGGGTCAAGATCAGGTTCGGAGTGAGGAGGAGAAAGTAAGAAATAAGAAACGAAGTTCGAATATTCTAGATATTAATAGGGTGCTTTGTGTGATGATGACATCTCTAGATGAATTGGGGTATTCTACAGATAAGTCAGCTGAAACCAGCCAAATGTTGCTGCGAGTCTTGCAGAAAGAGTTGAGGGCTTCAAGAGAGGAGGAAGGGTTGAACGTTGAGGACAAGGAGGTCAATTTTGTGGCCAAGTTTATGGAAATGGTGGTAAGTGCTAAAGAACTTTTGGGGGAAGATTCAAGCTTAACACGTAGGTCACGCAGGTCTAAAAAACGCTCAGAAATTCCTCAACCTCACACTCAGTCTCACACTGCTGGCGGCACCTCAGAAAAATTATCAATTTTATGGCAATGCTTCGGTTTCGTCTGCTTTCTCTATTTTTTGGTTAAGCTCTTAGTAAAATTGGCAGTTTGGGGGAAATCCTTCATCTCTTTTTTGGTCGCATTCGGGAAATTGTTCTGCTACTACCTCTTTCTCTGTTATTTTGTTATTATTATTATGAAAAAATTGCTGAGAGAAGAAAGCCATTAA 3645 0.2241 MVNHVGVSKTKCTYDVFLNFRGEDVRRTFICHLYQALDRKGIATFMDNKELKYGDELSPTLLKAIEESRISIVVFSKNYAASSWCLDELVKIHECIKSKKQQVWPIFYKMDPANVRHQKGSYGQAMTKHETRHGKDPEKLHKWRLALTYVANLKGQHLTQGTNEANFIEDLVSKIFNKVSPKDLSRYEHIVGRKYLVEELKLLLDLESHNITCLLGIYGTGGIGKTTLAKALYDSIYKQFEGSSFLSNVREKSKQIKGLELLQKSLLSDILEVEESKIQVKNIEEGIITIKSRLDFKRVLIILDDVDDIKQMYSLAREHDWFGLGSRIIITTRDQHLLDVGRIKKKYEVKVLNHPESLELFCQSVFRKNYPKSNYKDLSHRAIRCCKGLPLALKVLGCHLVGKDLSGWNDALDKYEKSPHEDVQKVLRISYDSLSLNEKDIFLDIVCFFNGWKLKQAKEVLDACDFNSGDGITTLVNKSLLTIDNKYLHMHDLIQAMGKYIVKEEAWNEFGERSRLWHHEDVLQVLADNNGSGKIQGIILDPPQSEEVNCTPTVFKKMGNLRILIVRNTKFLCKRCYLPNNLKLLYWENYPSPSFPSDFYPRKIVTFHLCESPSLVLKKPFKKFEHLTCICISSCCKVTEFPDVSGAMNLRELRLDRCENLVSIHESVGYLTNLVSIQVLGCTKLQSFVPTIYLPSLENLCFSLCTKLTYFPEIREMMDKPLKIIMMDTSITDLPESVEKLIGLKLIDMTGCKELRHLPSSLFMLPNFVTLKIGKCHGLRESFRRFQGSHSTCPKLETLDFCDADLSERDLSTIIYNFPNLKDLIVSQNNFVSLPADIIKSTKLASLDVSSCEKLEEISELPSSIEKVDARECNSLTWETSNMLWSQVRKEMKRLHVVMPNPKREIPEWFDYVKEGGYPVFEVRGKFPAVALAFVFGEVVANVNRLLSSVHMHLIIDGERKGYRKFSVNENHVLLYDLPNLFGLEERDVGNDWKTIMICCKTNLSLCSWGVYAYNQGIRFPGQDQVRSEEEKVRNKKRSSNILDINRVLCVMMTSLDELGYSTDKSAETSQMLLRVLQKELRASREEEGLNVEDKEVNFVAKFMEMVVSAKELLGEDSSLTRRSRRSKKRSEIPQPHTQSHTAGGTSEKLSILWQCFGFVCFLYFLVKLLVKLAVWGKSFISFLVAFGKLFCYYLFLCYFVIIIMKKLLREESH 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00289 1214 Gene3D - 11 182 IPR035897 -
Cca04g00289 1214 MobiDBLite consensus disorder prediction 1118 1144 - -
Cca04g00289 1214 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 935 IPR044974 GO:0006952
Cca04g00289 1214 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Cca04g00289 1214 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 155 IPR035897 -
Cca04g00289 1214 Pfam NB-ARC domain 194 434 IPR002182 GO:0043531
Cca04g00289 1214 PRINTS Disease resistance protein signature 214 229 - -
Cca04g00289 1214 PRINTS Disease resistance protein signature 293 307 - -
Cca04g00289 1214 PRINTS Disease resistance protein signature 386 400 - -
Cca04g00289 1214 PRINTS Disease resistance protein signature 739 755 - -
Cca04g00289 1214 SUPERFAMILY L domain-like 490 876 - -
Cca04g00289 1214 CDD AAA 217 334 - -
Cca04g00289 1214 Pfam TIR domain 14 186 IPR000157 GO:0007165
Cca04g00289 1214 Gene3D Ribonuclease Inhibitor 544 724 IPR032675 -
Cca04g00289 1214 Gene3D Ribonuclease Inhibitor 725 897 IPR032675 -
Cca04g00289 1214 Gene3D - 183 348 IPR027417 -
Cca04g00289 1214 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 9 935 - -
Cca04g00289 1214 Gene3D - 351 435 IPR042197 -
Cca04g00289 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 445 IPR027417 -
Cca04g00289 1214 SMART till_3 13 153 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00289 Cca-Chr4 2775112 2781214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00289 14 808 WRKY Transcription Factor Family AT4G12020 31.303 7.23e-94 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00289 - - ccaj:109798851 2383.99