Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00280 ATGCAATACACCACTTCATATAACACACATGACCAACACCACCCTTCAAACATAACTAAGACCATGCATTCCCACATTCCCTATCATTCCAACACCATGACCAAACCAAGAACCCTCAATCTCAGCCTCTTCCTCCTCCAAGACATCCAAATTCTGGAGATTCTCATTGCACTTCTTGTCTTCATACTCATCCACTCCCTGAGGCAAAAGAAGCACCATGGCCTAGTCACTTGGCCTGTCCTTGGAATGCTTCCTTCTTTGGTCACAGGACTCAGAACCAACATGTATGAATGGATCACCGAAGTTCTCATAAAACAAAACGGCACGTTCAGATTCAAAGGGCCATGGTTTAGCAACCTCAACTGCATTGTCACCTCGGATCCTCGCAACCTCGAGCACCTTCTCAAAACCAAGTTCCCTCTCTTCCCCAAGGGAGGTTACTTCAGGAACACAGTTAGGGACCTTCTAGGAGATGGCATATTCAATGCAGACGACGACACGTGGCAGAAGCAAAGAAAAACAGCAAGCATCGAGTTTCATTCAACCAGGTTCAGACAATTAACAACAGAATCATTGTTCGAACTTGTCCACTATAGGCTCTTGCCTGTGTTAGAGGCATCGGTTAAAAAATCTTTTGCCATAGACCTACAAGACATTCTCCTGAGGCTAACTTTTGATAACGTTTGCATGATAGCCTTTGGTGTTGATCCAGGTTGTTTGCGTTTGGATTTGCCAGAGATACCATTTGCCAAAGCCTTTGAGGATGCAACAGAAGCCACGGTGTTTCGGTTTGTTACCCCCACGTGTGTTTGGAAGGCCATGAGGCTTCTCAACTTGGGGGTGGAAAGGAAGCTGAAGAAGTCCATAAAAGGGGTTGATGAGTTTGCTGAGAATGTGATTAGGACTAGGAAGAAGGAACTTTCCTTGGAATGTGAGGGAACGAAGCAGAGGTCAGATTTGTTAACCGTGTTTATGAGGCTGCAGGATGAGAATGGAAGACCCTATTCGGATAAGTTTCTGAGGGATATATGTGTGAACTTTATATTGGCAGGGAGGGACACTTCTTCTGTTGCTTTGAGTTGGTTCTTCTGGTTGCTTGAACAGAATCCTGAAGTGGAGGAGAATATACTATCAGATATATGCAGGGTGGTGAGTCAGAGGAAGGACATAAAGAGGGAAGAGTTTGATAATTCTTTGAGATTTAGGCCTGAGGAGATCAAAAAGATGGATTATTTACATGCTGCTTTATCAGAAGCTCTAAGATTATACCCCTCTGTGCCTGTGGATCACAAGGAGGTAGTTGAAGATGATACATTCCCGGATGGAACAGTGCTAAAGAAAGGGACTAAAGTGATCTATGCAATCTATGCAATGGGAAGAATGGAAGGCATATGGGGGAAGGACTGCATGGAGTTCAGGCCAGAAAGATGGTTAAGAGATGGAAGGTTCATGAGTGAGTCAGCATACAAATTCACTGCTTTCAATGGTGGACCTCGTTTGTGCTTAGGCAAAGATTTTGCATACTATCAAATGAAATATGCTGCAGCCAGCATCATATTCCGCTACCGTGTGAAGGTGGTGGAGAATCACCCTGTGGTGCCTAAGCTTGCCTTAACTATGTACATGAAGCATGGATTGAAAGTTAACCTCTACCATAGGGATGCTACACAAATTCAAAAACACTTGGAGGATGGCTTGAAATGA 1704 0.4419 MQYTTSYNTHDQHHPSNITKTMHSHIPYHSNTMTKPRTLNLSLFLLQDIQILEILIALLVFILIHSLRQKKHHGLVTWPVLGMLPSLVTGLRTNMYEWITEVLIKQNGTFRFKGPWFSNLNCIVTSDPRNLEHLLKTKFPLFPKGGYFRNTVRDLLGDGIFNADDDTWQKQRKTASIEFHSTRFRQLTTESLFELVHYRLLPVLEASVKKSFAIDLQDILLRLTFDNVCMIAFGVDPGCLRLDLPEIPFAKAFEDATEATVFRFVTPTCVWKAMRLLNLGVERKLKKSIKGVDEFAENVIRTRKKELSLECEGTKQRSDLLTVFMRLQDENGRPYSDKFLRDICVNFILAGRDTSSVALSWFFWLLEQNPEVEENILSDICRVVSQRKDIKREEFDNSLRFRPEEIKKMDYLHAALSEALRLYPSVPVDHKEVVEDDTFPDGTVLKKGTKVIYAIYAMGRMEGIWGKDCMEFRPERWLRDGRFMSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIFRYRVKVVENHPVVPKLALTMYMKHGLKVNLYHRDATQIQKHLEDGLK 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00280 567 SUPERFAMILY Cytochrome P450 74 553 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00280 567 Pfam Cytochrome P450 77 539 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00280 567 PRINTS P450 superfamily signature 350 367 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00280 567 PRINTS P450 superfamily signature 414 425 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00280 567 PRINTS P450 superfamily signature 492 501 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00280 567 PRINTS P450 superfamily signature 501 512 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00280 567 PANTHER BNAC02G41740D PROTEIN 37 556 - -
Cca04g00280 567 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 494 503 IPR017972 GO:0005506|GO:0016705
Cca04g00280 567 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00280 567 PRINTS E-class P450 group I signature 339 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00280 567 PRINTS E-class P450 group I signature 359 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00280 567 PRINTS E-class P450 group I signature 413 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00280 567 PRINTS E-class P450 group I signature 491 501 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00280 567 PRINTS E-class P450 group I signature 501 524 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cca04g00280 567 PANTHER CYTOCHROME P450 37 556 - -
Cca04g00280 567 Gene3D Cytochrome P450 69 565 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00280 Cca-Chr4 2715139 2718141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00280 43 561 Cytochrome P450 AT5G23190 76.154 0.0 829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00280 K15402 - gmx:100809503 1028.85