Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00279 atgtgcttgtGGGTTCGTGACAGACAGATTGGGTTCAGGGGTGGTGGTGGTGACATTAATGGAGGCAGCGACTTTCTTCTTGAACTTGTCAAGACGGgattcatggccaagaagcaaggtctcgacttcatctatggtcagaagGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTTCGAGCATGAGGCCACTAGAAGAATGAGGAATGAGTTCATGGCAGCTTGGGATGGATTAAGGTCAAAAGAAAATCAAAGAATCCTTATTCTTGGTGCCACTAACAGGCCATTTGACCTTGATGATGCTGTTATTCGTCGCTTACCAAGAAGGTGGTGCTTTCGATGTTGCGCGAGCGGAAACGGAGAGAAGAAGAGGATCAAGAAGCTCTATGATACCATAAAGGAATTATATTGGTTTGGAGATGCTGAAAAACTAACCAAAGCACTCTTTTCGTTTGCCAGCAAGCTTGCTCCTGTCATTATTTTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTTCGAGCATGAGGCCACTAGAAGAATGAGGAATGAGTTCATGGCAGCTTGGGATGGATTAAGGTCAAAAGAAAATCAAAGAATCCTTATTCTTGGTGCCACTAACAGGCCATTTGACCTTGATGATGCTGTTATTCGTCGCTTACCAAGAAGGCGTGCCATTATTGACAGAGAAGCGGATAGAGTCTATGAATTACCGGGGCAACCTGGTGTAAAGTTTAAACACTATGCTGGTTATATTTCTGTCAATAAAACTCATGGGAGGGCATTGTTTTATTGGTTTTTTGAGGCCACTCATAAACCACAAAAACAACCTCTTCTCTTATGGCTCAATGGAGGACCTGGTTGCTCGTCCATTGCCTTTGGAGTAGCACGAGAGCTTGGTCCATTTCTTGTGCAAGACAAAGAACACCTCAAACTTAATAAATTCTCTTGGAACAGAGTTGCAAACATCATATTCTTGGAGGCACCGGTTGGTGTGGGCTTTTCTTACACTAACAATTCCAAAGATTTACGTGAGCTTGGAGATCGTATTTTTGCTATTGATAACTATGCCTTCTTGACTGGTTGGTTCCAAAGGTTCCCAAGCTTCAAATCTCACGATTTTTATATTGCAGGAGAGAGCTATGCAGGGCATTATGTTCCACAACTTGTTGAACTTATCTATGAAGGAAACAAAGATCCCAAAAAAAGACTCTTACATAAATCTCAAGGGATTCATG 1249 0.4083 MCLWVRDRQIGFRGGGGDINGGSDFLLELVKTGFMAKKQGLDFIYGQKVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRWCFRCCASGNGEKKRIKKLYDTIKELYWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRRAIIDREADRVYELPGQPGVKFKHYAGYISVNKTHGRALFYWFFEATHKPQKQPLLLWLNGGPGCSSIAFGVARELGPFLVQDKEHLKLNKFSWNRVANIIFLEAPVGVGFSYTNNSKDLRELGDRIFAIDNYAFLTGWFQRFPSFKSHDFYIAGESYAGHYVPQLVELIYEGNKDPKKRLLHKSQGIH 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00279 416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 226 IPR027417 -
Cca04g00279 416 ProSitePatterns AAA-protein family signature. 87 106 IPR003960 GO:0005524|GO:0016887
Cca04g00279 416 ProSitePatterns AAA-protein family signature. 204 223 IPR003960 GO:0005524|GO:0016887
Cca04g00279 416 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 114 IPR027417 -
Cca04g00279 416 Pfam ATPase family associated with various cellular activities (AAA) 42 111 IPR003959 GO:0005524|GO:0016887
Cca04g00279 416 Pfam ATPase family associated with various cellular activities (AAA) 135 228 IPR003959 GO:0005524|GO:0016887
Cca04g00279 416 PRINTS Carboxypeptidase C serine protease (S10) family signature 366 391 IPR001563 GO:0004185|GO:0006508
Cca04g00279 416 PRINTS Carboxypeptidase C serine protease (S10) family signature 317 329 IPR001563 GO:0004185|GO:0006508
Cca04g00279 416 PRINTS Carboxypeptidase C serine protease (S10) family signature 330 340 IPR001563 GO:0004185|GO:0006508
Cca04g00279 416 Pfam Serine carboxypeptidase 245 406 IPR001563 GO:0004185|GO:0006508
Cca04g00279 416 CDD AAA 143 227 - -
Cca04g00279 416 ProSitePatterns Serine carboxypeptidases, serine active site. 380 387 IPR018202 GO:0004185
Cca04g00279 416 SUPERFAMILY alpha/beta-Hydrolases 234 402 IPR029058 -
Cca04g00279 416 Gene3D - 36 115 IPR027417 -
Cca04g00279 416 Gene3D - 138 229 IPR027417 -
Cca04g00279 416 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 44 110 - -
Cca04g00279 416 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 137 228 - -
Cca04g00279 416 Gene3D alpha/beta hydrolase 235 415 IPR029058 -
Cca04g00279 416 PANTHER - 44 110 - -
Cca04g00279 416 PANTHER - 137 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00279 Cca-Chr4 2697475 2709476 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00279 138 236 Calmodulin-binding Proteins AT3G56690 29.293 2.38e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00279 K16297 - gmx:100799746 301.982