Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00278 ATGTGTAGCCAAAGCTTGCTCAGTCGGCTTTTCCAGATGTTTAATAGGGTGGAGCCTCCTATTTTGTTGAAGATACTGAAGTGTATTAATCATCTGTCAACTGATCCAAATTGCTTAGAAAATCTTCAGCGTGCTGAAGCAATTAAATACTTGATACCAAATCTTGAACTCAAAGAAGGGTCCCTTGTTTCAGAGATACATCATGAGGTGTTGAACGCACTATTCAATTTATGCAAGATAAATAAGAGGAGACAAGAACAAGCAGCTGAAAATGGAATCATTCCCCATTTGATGCAATTCATCACATCAAATTCTCCCTTGAAACAATATGCATTGCCACTGTTATGTGACATGGCTCATGCATCTCGCAATTCAAGGGAGCAGTTAAGGGCTCATGGTGGTTTGGATGTCTATTTGAACCTTCTTGAGGATGAGATCTGGTCTGTTACAGCACTAGATTCTATTGCTGTTTGTTTAGCCCATGATAATGACAACAGGAAGGTTGAACAATCATTGCTGAAAAAGGATGCAGTTCAAAAGCTTGTGAAGTTCTTCCAGTGCTGTCCAGAGCAGCATTTTGTACACATATTGGAGCCATTCTTGAAAATCATCACAAAATCTGCAAGGATCAATACCACATTGGCTGTTAATGGATTAACGCCATTGCTCATTGCAAGGCTAGATCATCAGGATGCTATAGCTCGTCTTAATTTGCTCAGGCTAATAAAGGCTGTTTATGAGCATCATCCTCAGCCCAAGAAGTTGATTGTGGAAAATGATCTGCCTGAAAAACTTCAAAACTTAATAGGGGAACGGAGAGATGGGCAAGTGTTGGTCAAACAGATGGCTACGTCATTACTTAAAGCACTACACATAAACACCGTTttgtaa 891 0.3973 MCSQSLLSRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRAEAIKYLIPNLELKEGSLVSEIHHEVLNALFNLCKINKRRQEQAAENGIIPHLMQFITSNSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLNLLEDEIWSVTALDSIAVCLAHDNDNRKVEQSLLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSARINTTLAVNGLTPLLIARLDHQDAIARLNLLRLIKAVYEHHPQPKKLIVENDLPEKLQNLIGERRDGQVLVKQMATSLLKALHINTVL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00278 296 PANTHER MAP KINASE KINASE KINASE 112 258 - -
Cca04g00278 296 Gene3D - 1 293 IPR011989 -
Cca04g00278 296 SUPERFAMILY ARM repeat 4 289 IPR016024 -
Cca04g00278 296 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 112 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00278 Cca-Chr4 2688616 2691808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00278 1 296 MAP Kinase Kinase Kinase AT3G13530 87.708 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00278 - - ccaj:109798735 587.415