Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00277 atgggtggaggaggcgttggtggtggggaagaattcattgtagaggtagattcagCCATAGGAAGATGTTGCGCGAGCGGAAACGGAGAGAAGAAGAGGATCAAGAAGCTCTATGATACCATAAAGGAATTATATTGGTTTGGAGATGCTGAAAAACTAACCAAAGCACTCTTTTCGTTTGCCAGCAAGCTTGCTCCTGTCATTATTTTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTTCGAGCATGAGGCCACTAGAAGAATGAGGAATGAGTTCATGGCAGCTTGGGATGGATTAAGGTCAAAAGAAAATCAAAGAATCCTTATTCTTGGTGCCACTAACAGGCCATTTGACCTTGATGATGCTGTTATTCGTCGCTTACCAAGAAGGATATATGTTGATTTACCAGATGCTGAAAATCGAATGAAGATTTTAAGAATCTTTCTTGCACAAGAAAATTTGGATTCAAATTTTCAGTTTGACAAACTAGCTAACTTGACTGATGGATACTCTGGCAGTGATTTGAAGAACCTCTGTATTGCTGCGGCATATAGACCTGTTCAAGAACTCTTAGAGGAAGAAAAGAAGGGAGCCAGTGAGGGTACAACTTCAGTACTAAGGCCTCTTAATGTGGATGATTTTATTCAGGCAAAATCCAAGGTGGGTCCATCAGTTGCGTATGATGCAACAAGCATGAATGAGTTGAGGAAGTGGAACGAAATGTACGGAGAAGGCGGTAGTAGGACAAAATCACCTTTTGGATTTGGGACTTGA 789 0.384 MGGGGVGGGEEFIVEVDSAIGRCCASGNGEKKRIKKLYDTIKELYWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAQENLDSNFQFDKLANLTDGYSGSDLKNLCIAAAYRPVQELLEEEKKGASEGTTSVLRPLNVDDFIQAKSKVGPSVAYDATSMNELRKWNEMYGEGGSRTKSPFGFGT 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00277 262 Gene3D - 46 244 IPR027417 -
Cca04g00277 262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 230 IPR027417 -
Cca04g00277 262 Pfam ATPase family associated with various cellular activities (AAA) 42 139 IPR003959 GO:0005524|GO:0016887
Cca04g00277 262 Pfam AAA+ lid domain 163 197 IPR041569 -
Cca04g00277 262 Gene3D - 141 226 - -
Cca04g00277 262 PANTHER - 45 261 - -
Cca04g00277 262 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 45 261 - -
Cca04g00277 262 CDD AAA 51 140 - -
Cca04g00277 262 ProSitePatterns AAA-protein family signature. 112 131 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00277 Cca-Chr4 2682434 2687272 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00277 46 203 Calmodulin-binding Proteins AT3G56690 31.056 1.50e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00277 - - ccaj:109798583 433.721