Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00262 ATGTGGCGGTTTACAAGGCTGTGCAAAAAGCCAGGAGAGTTTGTCATCGCCTTTCCTAGAGCATATCATTCTGGATATAGTAGTGGCTTTAACTGTGGAGGAGCAGTGAATTTTACAATTGGTGACTGGTTTCCATTAGGGGCTGCAGCTAACAATAAATCACATAAGTGCTCTTGTGGAGGCATATATACCATCTTGAAGAGGGATGACATGTTGGAAATGGAAGATGCTGCTAAAAGACTTGAACAAGAAGATATCCGGTCCGTAGTATACGGAAAATGGATTGGTTACGGAGATAAGTAG 303 0.4224 MWRFTRLCKKPGEFVIAFPRAYHSGYSSGFNCGGAVNFTIGDWFPLGAAANNKSHKCSCGGIYTILKRDDMLEMEDAAKRLEQEDIRSVVYGKWIGYGDK 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00262 100 Pfam JmjC domain, hydroxylase 4 38 IPR003347 -
Cca04g00262 100 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 52 - -
Cca04g00262 100 ProSiteProfiles JmjC domain profile. 1 55 IPR003347 -
Cca04g00262 100 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 8 52 - -
Cca04g00262 100 SUPERFAMILY Clavaminate synthase-like 10 52 - -
Cca04g00262 100 Gene3D Cupin 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00262 Cca-Chr4 2547394 2548326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00262 6 50 C2H2 Transcription Factor Family AT5G04240 53.333 4.43e-13 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca04g00262 JmjC 2.4e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00262 - - osa:4330404 86.6557