Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00255 ATGGATTGTACAGCTGCAAGAAAGACACTAAAGGCTGACCGAGAAAAGCTTAGGAGGGATCGGCTCAATGAACAGTTTGTAGAACTGGGCAACATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATACTATTCAATTGCTAAAGGACCTTACTTCTCAAGTTAGTAAACTTAAAGATGAATATACTACACTTAATGAAGAATCATGTGAGTTGTCTCAGGAGAAAAATGATCTGAGAGAAGAGAAGGCTTCTCTTAAATCGGATATTGAGAGGTTGAATAATCAGTATCAGCAACAGCTCAGGACTATGTCTCCATGGACTGCAATGGATCATTCAGTAATGCTAGCTCCACCATCATATCCGTATCCAATGCCAATGCCAATGCCAATACCTCCTGCTCCAATTGGCATGCAACCATACCCTTTCTATGCTAATCAACATTCTGGAATCATCCCTAACCCTTGTTCAACATTTGTTCCTTATTTAGTCCCCAATACCTTTGTTGAACAGCAATCCACCCAGCATATATCCCCACCACTTCATCCAGGTTTTCAGTCCTGTGTGTCAGGAAAACAAGAATCCAGTAACAAATCATCCAAGGAGAGCAAGGCTGAAAAACAGGAGGATTCCAATGATGTGACTGCAGACCTGACTCCTGGGTTTGCAGATCAGGACTTGTTATCTGGACAAAGAAAATGTAGCATGTTGTCAAGGAAGGAAAGCAGTTGCACTGAATTGAGTTCGTTAGGTAGGAGTTCCTTGTCTTGTAGCATTCAGGATAGTTCATCAAGTAGTGTAGTTCACGAGCACAAAGGCTAG 837 0.4182 MDCTAARKTLKADREKLRRDRLNEQFVELGNILDPDRPKNDKATILGDTIQLLKDLTSQVSKLKDEYTTLNEESCELSQEKNDLREEKASLKSDIERLNNQYQQQLRTMSPWTAMDHSVMLAPPSYPYPMPMPMPIPPAPIGMQPYPFYANQHSGIIPNPCSTFVPYLVPNTFVEQQSTQHISPPLHPGFQSCVSGKQESSNKSSKESKAEKQEDSNDVTADLTPGFADQDLLSGQRKCSMLSRKESSCTELSSLGRSSLSCSIQDSSSSSVVHEHKG 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00255 278 PANTHER TRANSCRIPTION FACTOR BHLH121 1 277 IPR044579 GO:0003700|GO:0055072
Cca04g00255 278 Gene3D - 5 87 IPR036638 GO:0046983
Cca04g00255 278 MobiDBLite consensus disorder prediction 179 229 - -
Cca04g00255 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Cca04g00255 278 MobiDBLite consensus disorder prediction 202 218 - -
Cca04g00255 278 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Cca04g00255 278 MobiDBLite consensus disorder prediction 255 271 - -
Cca04g00255 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 75 IPR036638 GO:0046983
Cca04g00255 278 CDD bHLH_AtILR3_like 11 85 - -
Cca04g00255 278 PANTHER TRANSCRIPTION FACTOR BHLH121 1 277 - -
Cca04g00255 278 Coils Coil 46 108 - -
Cca04g00255 278 MobiDBLite consensus disorder prediction 255 278 - -
Cca04g00255 278 SMART finulus 12 62 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00255 Cca-Chr4 2473775 2476790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00255 1 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 59.917 2.12e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca04g00255 HLH 6.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00255 - - gmx:100817000 390.963