Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00247 ATGTGTTTGGTTCGTAAGAAATCTTTATGGCAAAATCCACTTGCCTCAATCGGTGCCCATGAAATTCTCACAGTAGAGATGTGGAAAGCAGCACTAACAGAATTAACAGCAACTGCTTCACTAATGTTCACCTTGACGACTTCAATTATTGCATGTTTGGACTCACATGAGGTGGATCCTAAGCTTCTTGTTCCCTTTGCAGTGTTCATCATAGCCTTTTTGTTCCTAGTTGTGATGGTTCCTCTCACGGGGGGGCACATGAGTCCCGTTTTCACATTCATTGCTGCCTTAAAAGGTGTTGTGACTCTTACACGTGCTCTCGTTTACGTGCTAGCACAATGCATTGGCTCAATAATCGGTTTCTTTATACTAAAGTGTGTCATAGAGCCAAGATTGGCTTACACATATTCGTTGGGAGGGTGTGCAATCAGTGGCACAGGTGTAAATTATGGTATAAAGTCACAAGATGCTTTGTTAGTGGAATTTACATGCACATTTCTGGTACTATTTGTGGGTGTTACATTGGCATTTGACAAGAAAAGGTCTACACATTTGGGCCTCCCCATGGTATGCTTGGTGGTGGCTGGGGCCATGGCATTGGCAGTTTTTGTGTCCATAACTGTAACTGGGCGGGCTGGTTATGCGGGTGTGGGCCTCAACCCAGCCAGATGTTTGGGCCCAGCGTTGCTTCATGGTGGCTCGCTTTGGGAAGGGCATTGGGTTTTCTGGGTTGGGCCTTTCTTGGCATGCCTAGTTTATTATGCTGTGTCCATCAACCTACCAAAGGAGGGTTTGGTTTGGGTAGATGGAGAATATGATGTGTTAAAGTTGGCTCTTGGTTCTTCTGCCTCTCTGTATAATCCTTCCGTTCCAAATAGTTTACCAGAAGAACGCAATGCAGAGTTTCAAGTACAAAAACTAGGAGTTGTTCAGTCTCTCATCAATAATCAAGAAGAACGTGCAAGGAATTGGGTGCTTGGTGGTGGCACTGGGCGGGCCGGTTATGCTGGTGTGGGCCTGAGCCCGGGAAGATGCTTCATGGAGGGTCGCTCTGGAATGGGCATTGGATTTTCTGGGTTGGGCCTTTCTTGGGCTGCATAG 1101 0.465 MCLVRKKSLWQNPLASIGAHEILTVEMWKAALTELTATASLMFTLTTSIIACLDSHEVDPKLLVPFAVFIIAFLFLVVMVPLTGGHMSPVFTFIAALKGVVTLTRALVYVLAQCIGSIIGFFILKCVIEPRLAYTYSLGGCAISGTGVNYGIKSQDALLVEFTCTFLVLFVGVTLAFDKKRSTHLGLPMVCLVVAGAMALAVFVSITVTGRAGYAGVGLNPARCLGPALLHGGSLWEGHWVFWVGPFLACLVYYAVSINLPKEGLVWVDGEYDVLKLALGSSASLYNPSVPNSLPEERNAEFQVQKLGVVQSLINNQEERARNWVLGGGTGRAGYAGVGLSPGRCFMEGRSGMGIGFSGLGLSWAA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00247 366 Pfam Major intrinsic protein 23 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00247 366 PRINTS Major intrinsic protein family signature 29 48 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00247 366 PRINTS Major intrinsic protein family signature 105 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00247 366 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00247 366 PRINTS Major intrinsic protein family signature 201 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00247 366 PRINTS Major intrinsic protein family signature 68 92 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00247 366 PRINTS Major intrinsic protein family signature 240 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca04g00247 366 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 5 289 - -
Cca04g00247 366 Gene3D Glycerol uptake facilitator protein. 14 262 IPR023271 -
Cca04g00247 366 SUPERFAMILY Aquaporin-like 25 253 IPR023271 -
Cca04g00247 366 PANTHER AQUAPORIN-LIKE 5 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00247 Cca-Chr4 2424625 2426458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00247 80 263 Major Intrinsic Protein MIP AT1G17810 32.984 2.10e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00247 K09866 - gmx:100804160 503.827