Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00243 ATGTTCGTTAATGAacaaacacaaacaccacttcaaccacttcacacaagctcaagcataaccaGATTATTATTAATGGAAGCTATATTCCTCACCAAACCAGCTTCTCACCTCAAAACCAAACACTCCCCCAACCCCAAACACCTCTTCCCTTCCAAACATAAATCAATTCTCCCCCTCCGccgcacccgcacccgcacccgcaccAACTTCCCCGCCGCAATCCAAAACCAACAACAGCAAGAGGCGCCAAAACCCACCGAAGATGAGTCCTACGGAGAAGTCAAAGGCCTCATCGCCAGCAGAGCCGTCGACGCCGCCGCCATGGAGTACCTCATCGAGTGGAAAGACGGCCACGCGCCCTCCTGGCTCCCCGCCGAATTCATAGCCAAAGACGTCGTCGCCGAGTACGAGACTCCCTGGTGGACCGCCGCCAAGAAAGCCGACGACTCCGCGTTAAGAAAAATCCTCGACTCCGCCGACGGCCGCGACGTCGACGCCGTAGACGCCGACGGCCGCACGGCGCTCCTCTTCGTCGCCGGCCTCGGCTCGGAGCCCTGCGTGAAGCTGCTGGCGGAGGCCGGCGCGAATCTGGACCACCGCGACCGGAGCGGCGGGCTCGCGGCGCTGCACATGGCGGCGGGGTACGTGCGGCCGGGCGTGGCGAAGGTGCTTCTGGATCTCGGCGCGGATCCTGAGGTGGCGGACGAGCGCGGGAGGACGGCGCTGGATCTGGCGCGGGAGATTCTGAAGGCGACGCCGAGGGGAAATCCGATGCAGTTCGGGCGTAGGATAGGGTTGGAGGGCGTGATTAGGGTTTTGGAAGGAGCGGTGTTCGAGTACGCGGAGGTGCAGGAGATTGTGGAGCGCAGAGGGAAGGGTGAGAATTTGGAGTACTTGGTGCGGTGGAAGGACGGTGGTGCCAATGAGTGGGTGAAGGCAAAGTTTGTGGCGGAGGATTTGGTCAGAGACTACGAGGCTGGCCTCGAATACGCCGTCGCTCAGGCGGTTATAGGTCGTAGAGTCGGGGATGAAGGCACGCCCGAGTTTTTGGTTAAATGGGCCGATTTGGATGAGCCCACCTGGGAGCCTCAAGAGAATGTGGACCCTGAGCTTGTCAAAGCTTTCGAGGAGAGTACTAACCAGGCCCAGCCCAGTATTAATGGGCCTGCTGTCGTCGTTTCAAATCAGGATAGCGCCTGA 1203 0.5628 MFVNEQTQTPLQPLHTSSSITRLLLMEAIFLTKPASHLKTKHSPNPKHLFPSKHKSILPLRRTRTRTRTNFPAAIQNQQQQEAPKPTEDESYGEVKGLIASRAVDAAAMEYLIEWKDGHAPSWLPAEFIAKDVVAEYETPWWTAAKKADDSALRKILDSADGRDVDAVDADGRTALLFVAGLGSEPCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKVLLDLGADPEVADERGRTALDLAREILKATPRGNPMQFGRRIGLEGVIRVLEGAVFEYAEVQEIVERRGKGENLEYLVRWKDGGANEWVKAKFVAEDLVRDYEAGLEYAVAQAVIGRRVGDEGTPEFLVKWADLDEPTWEPQENVDPELVKAFEESTNQAQPSINGPAVVVSNQDSA 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00243 400 MobiDBLite consensus disorder prediction 377 400 - -
Cca04g00243 400 SUPERFAMILY Chromo domain-like 330 379 IPR016197 -
Cca04g00243 400 Pfam Chromo (CHRromatin Organisation MOdifier) domain 335 378 IPR023780 -
Cca04g00243 400 ProSiteProfiles Ankyrin repeat profile. 171 203 IPR002110 GO:0005515
Cca04g00243 400 Gene3D - 328 379 - -
Cca04g00243 400 ProSiteProfiles Ankyrin repeat region circular profile. 205 237 - -
Cca04g00243 400 SMART chromo_7 280 330 IPR000953 -
Cca04g00243 400 SMART chromo_7 91 142 IPR000953 -
Cca04g00243 400 SMART chromo_7 331 381 IPR000953 -
Cca04g00243 400 Gene3D - 278 327 - -
Cca04g00243 400 Gene3D - 89 135 - -
Cca04g00243 400 ProSiteProfiles Chromo and chromo shadow domain profile. 331 388 IPR000953 -
Cca04g00243 400 PANTHER HOMEOBOX PROTEIN WARIAI 26 382 - -
Cca04g00243 400 SMART ANK_2a 136 167 IPR002110 GO:0005515
Cca04g00243 400 SMART ANK_2a 171 200 IPR002110 GO:0005515
Cca04g00243 400 SMART ANK_2a 205 234 IPR002110 GO:0005515
Cca04g00243 400 MobiDBLite consensus disorder prediction 72 86 - -
Cca04g00243 400 MobiDBLite consensus disorder prediction 72 91 - -
Cca04g00243 400 CDD CD3_cpSRP43_like 329 377 - -
Cca04g00243 400 Pfam Ankyrin repeats (many copies) 191 246 IPR002110 GO:0005515
Cca04g00243 400 Gene3D - 136 277 IPR036770 -
Cca04g00243 400 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Cca04g00243 400 SUPERFAMILY Chromo domain-like 280 327 IPR016197 -
Cca04g00243 400 PANTHER SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC 26 382 IPR030300 GO:0009416|GO:0009507|GO:0045038|GO:0080085
Cca04g00243 400 SUPERFAMILY Chromo domain-like 89 141 IPR016197 -
Cca04g00243 400 ProSiteProfiles Ankyrin repeat region circular profile. 171 203 - -
Cca04g00243 400 SUPERFAMILY Ankyrin repeat 137 248 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00243 161 246 CAMTA Transcription Factor Family AT5G09410 39.362 1.71e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00243 K12271 - gmx:100818382 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00243 04 2395938 2397432 Cca04g00243 04 2395938 2397432 ECH