Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00239 aTGAATTTCTTTACTTGCTTCTTTTTCTTCCTTCTTGCTTCATCAGCCACTGCTTGTGATCGCTGCCTTCAACAATCCAAGGCTTCCTATTTCTCCAAAGCTTCTGCTCTTTCATCTGGGGCATGTGGGTATGGCTCTTTGACACTAGGCTTAAGTGGTGGACACCTTGCAGCTGGTGTGGCTTCTCTCTTCAAAGATGGAGCCGGTTGTGGTGCCTGCTTTCAGATACGATGCAAGAACCCAACTGTGTGCAGCAAAGAAGGCACCAGAGTGGTGTTGACTGATCTCAATCACAATAATAAAACTGACTTTGTGCTCAGCAGCAGAGCCTTTGCAGCAATGGCTCAGAAGGGTATGGGCCAACAAGTTTTGAAGCTTGGCATTGTTGACATTGAATACAAGAGAGTACCATGTGAGTACAAAAATCAGAATTTGGCCGTCCGTGTAGAAGAATCAAGCAAGAAGCCTGATTACTTGGCAATTAAATTTTTGTATCAAGGGGGACAAACTGAGATAGTAGCCGTTGATGTGGCTCAGGTATGTTGTTGCTGCTTGCTAGACAAAGTATACAACTATATATTATTTGATTGA 591 0.4365 MNFFTCFFFFLLASSATACDRCLQQSKASYFSKASALSSGACGYGSLTLGLSGGHLAAGVASLFKDGAGCGACFQIRCKNPTVCSKEGTRVVLTDLNHNNKTDFVLSSRAFAAMAQKGMGQQVLKLGIVDIEYKRVPCEYKNQNLAVRVEESSKKPDYLAIKFLYQGGQTEIVAVDVAQVCCCCLLDKVYNYILFD 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00239 196 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Cca04g00239 196 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Cca04g00239 196 PRINTS Major pollen allergen Lol pI signature 58 69 IPR005795 GO:0005576|GO:0019953
Cca04g00239 196 PRINTS Major pollen allergen Lol pI signature 78 88 IPR005795 GO:0005576|GO:0019953
Cca04g00239 196 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Cca04g00239 196 Gene3D - 139 186 IPR036749 -
Cca04g00239 196 Gene3D - 12 138 IPR036908 -
Cca04g00239 196 SMART dpbb_1 57 133 IPR007112 -
Cca04g00239 196 Pfam Lytic transglycolase 57 133 IPR009009 -
Cca04g00239 196 PANTHER EXPANSIN-B3 5 180 - -
Cca04g00239 196 PANTHER EXPANSIN-LIKE A1-RELATED 5 180 - -
Cca04g00239 196 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Cca04g00239 196 Pfam Expansin C-terminal domain 146 179 IPR007117 -
Cca04g00239 196 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Cca04g00239 196 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cca04g00239 196 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Cca04g00239 196 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00239 Cca-Chr4 2333241 2335633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00239 3 180 Expansin Gene Family AT3G45960 62.222 1.47e-67 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00239 - - gmx:100305884 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00239 04 2333241 2335633 Cca04g00239 04 2333241 2335633 ECH