Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00238 ATGGCATCCATGGAAGACATGAACATGAGTGGGGAAGTTACACTTCCAGGGTTCCGATTCCACCCCACAGAAGAAGAACTCCTCGATTTCTATCTTAAGAACATGGTCGTTGGCAAGAAACTTCGTTATGATGTCATTGGTTTTCTCAACATCTATCATCATGATCCATGGGACTTGCCTGGTTTGGCAAAGGTTGGGGAAAGAGAATGGTACTTCTTTGTGCCAAGGGACAAAAAGCATGGGAGCGGGGGAAGGCCTAACCGCACCACTGAAAAAGGGTTCTGGAAAGCAACCGGTTCAGACCGGAAAATAGTTACCTTGTCTGATCCGAAACGCATCATCGGTTTAAGGAAGACCCTGGTTTTCTACGAGGGAAGAGCTCCTAAGGGATGCAAGACCGATTGGGTCATGAATGAGTACCGTTTACCTGACAATTGCAAATTACCTAAGGAAATCGTGTTGTGCAAGATATATCGAAAGGCAACTTCTTTGAAGGTGCTGGAGCAAAGGGCAGCCCTAGAGGAAGAGAGAGAGATGAAGCAAATGGTTGGTTCCCCTGCGTCCCCTCCTTCCTCCACGGACACCATGTCCTTCAGCAGTCCTCAAGAAGAGCAAAACGTGCCCCTAATTCCTTTGTTGCAACATGTTCTTAAGAAAGAATCTGAAATTGAAGAAATGGTGTCACTGCCAAAACAAGAAAAAACTACAACCAACCAATTGGGCTTAAAAGACAACAAAGGCCCATGTGGAACTTCCGTACAATTGCCCTTCGGGAAGGACAAGCTCCCGGACCTGCAGCTACCCATGCTCACGGACTGGACCCAAGACACATTTTGGGCCCAATTGAATAGCCCATGGCTACAAAACTTTACTCCAACCAACATCTTAAACTTCTACTGA 900 0.4656 MASMEDMNMSGEVTLPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGFLNIYHHDPWDLPGLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPKGCKTDWVMNEYRLPDNCKLPKEIVLCKIYRKATSLKVLEQRAALEEEREMKQMVGSPASPPSSTDTMSFSSPQEEQNVPLIPLLQHVLKKESEIEEMVSLPKQEKTTTNQLGLKDNKGPCGTSVQLPFGKDKLPDLQLPMLTDWTQDTFWAQLNSPWLQNFTPTNILNFY 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00238 299 PANTHER NAC TRANSCRIPTION FACTOR 29-LIKE 6 298 - -
Cca04g00238 299 MobiDBLite consensus disorder prediction 185 201 - -
Cca04g00238 299 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 298 - -
Cca04g00238 299 MobiDBLite consensus disorder prediction 177 201 - -
Cca04g00238 299 ProSiteProfiles NAC domain profile. 14 160 IPR003441 GO:0003677|GO:0006355
Cca04g00238 299 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
Cca04g00238 299 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Cca04g00238 299 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00238 Cca-Chr4 2308829 2310675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00238 9 299 NAC Transcription Factor Family AT2G17040 58.249 3.95e-115 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca04g00238 NAM 4.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00238 - - gmx:732555 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00238 04 2308829 2310675 Cca04g00238 04 2308829 2310675 ECH