Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00237 ATGCTTCAAAGCTTGGTCCCCGGCACTCCCAACCCTAACGCCATGAAGACAAAGCGCGCCGACGCCGATTCCCCCGCTCACCAGCCTCCCTTCAAGCGCGCCGCCGAGGTTGAGCCGGACCCCGAGGAGGAGCAGGCGTTCGACCCCGAACCACACGGCGGCGAGTCCACCGGCCTCAAACTCCTCGGCCTCCTCCTCCAATGCGCGGAGTGCGTCGCCATGGATAAGCTCGACTTCGCCAACGACCTCCTCCCGGAGATCGCGGAGCTCTCGTCGCCGTTCGGCTCCTCGCCGGAGCGAGTCGGCGCGTACTTCGCGCAGGCGCTGCAGGCGCGCGTGGTGAGTTCCTGCCTGAGCTCGTACTTGCCGCTGACTGCGAAATCGGTAACCCTAACTCAGTCGCAGCGAATCTTCAACGCGTTCCAATCGTACAACTCGGTGTCGCCGCTGGTGAAGTTCTCGCACTTCACCGCGAACCAGGCGATCTTCCAGGCGCTGGACGGCGAGGATCGCGTCCACATCATCGACCTGGACATCATGCAGGGACTCCAATGGCCGGGACTGTTCCACATCCTGGCCTCTCGGTCGAAGAAAATCCGGTCCATGAGAATCACCGGATTCGGATCCTCCTCGGAGCTTCTGGAGTCGACCGGGCGGCGACTGGCGGATTTCGCCAGCTCGCTAGGGCTTCCGTTCGAGTTCCATCCGGTGGAAGGGAAAATCGGGAGCGTGACGGAGGTGAGTCAACTCGGTGTTCAACCTAACGAGGCAATCGTGGTGCACTGGATGCAGCACTGCTTGTATGACATAACAGGGAGCGACTTAGCGACGCTGAGATTGCTGACTCAGCTTCACCCGAAGCTCATAACCACCGTGGAGCAGGATCTGAGCCACGCCGGCAGCTTCCTTTCGCGGTTCGTGGAGGCTTTGCATTACTACAGCGCATTGTTCGACGCCCTCGGGGACGGATTGGGTGCGGAGAGCCTGGAGAGGCACACGGTGGAGCAGCAGCTGTTGGGGTGCGAGATCAGAAACATCGTGGCCGTGGGCGGCCCCAAGCGGACTGGTGAGGTTCAGGTGGAGAGGTGGGCTGATGAGCTCAAACGGGCCGGGTTCCGGGCCGTTTCTCTCCGGGGCAACCCGGCCGCTCAGGCTAGTTTGTTGCTTGGCATGTTCCCTTGGAGAGGTTACACTCTTGTTGAGGAGAATGGGTCCCTCAAGCTTGGTTGGAAGGATCTCTCTCTCTTGATTGCCTCCGCTTGGCAACCCTCTCATTGA 1278 0.6127 MLQSLVPGTPNPNAMKTKRADADSPAHQPPFKRAAEVEPDPEEEQAFDPEPHGGESTGLKLLGLLLQCAECVAMDKLDFANDLLPEIAELSSPFGSSPERVGAYFAQALQARVVSSCLSSYLPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALDGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLESTGRRLADFASSLGLPFEFHPVEGKIGSVTEVSQLGVQPNEAIVVHWMQHCLYDITGSDLATLRLLTQLHPKLITTVEQDLSHAGSFLSRFVEALHYYSALFDALGDGLGAESLERHTVEQQLLGCEIRNIVAVGGPKRTGEVQVERWADELKRAGFRAVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQPSH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00237 425 Pfam GRAS domain family 63 422 IPR005202 -
Cca04g00237 425 ProSiteProfiles GRAS family profile. 52 422 IPR005202 -
Cca04g00237 425 PANTHER SCARECROW-LIKE PROTEIN 23 13 423 - -
Cca04g00237 425 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 13 423 IPR005202 -
Cca04g00237 425 MobiDBLite consensus disorder prediction 1 53 - -
Cca04g00237 425 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00237 Cca-Chr4 2288842 2291136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00237 15 422 GRAS Transcription Factor Family AT5G41920 67.397 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g00237 GRAS 9e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00237 - - ccaj:109798500 833.172