Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00232 ATGGGATTTATGTTGCAAGAAGGGTCGTCTTCTGTAAATTCTTCACCCCTGAAGCTCTTCTCCATGATGTCACTTTCACCTAGCTTAGGTTCTCCCAACAATCTCTTGCTTAGAGAGATGAAATCCGAGGAAAGGGGTTTGTACTTGATCCATTTGTTGCTCACTTGTGCAAATCATGTAGCTGCTGGTAACCTTGAAAATGCTAATACCACCCTTGAGCAAATTTCCCTGCTTGCTTCCCCTGATGGGGATACTATGCAGCGAATCGCGGTATATTTTATGGAATCACTTGCTGATCGGATTCTTAAAACATGGCCTGGGATCCACAGAGCCCTCAACTCAACCAGAATGACCATGCTATCCGAAGAAATTCTTGTTCAGAAGCACTTCTTTGAGCTTTTCCCCTTCTTGAAGGTGGCGTTTGTTCTCACAAATCAGGCCATCGTTGAAGCAATGGAAGGGGAGAAAATGATTCACATAATTGATCTCAATGCTGCTGAAGCTGCTCAGTGGATTGCACTCCTTCAAGTTTTGAGTGCGCGACCTGAAGGCCCTCCTCATTTGAGGATCACTGGGGTTCATCAGAAAAAGGAGATTCTGGACCAGGTGGCTCATAGACTTACTGAAGAAGCAGAAAAGTTGGATATACCATTCCAATTCAACCCTGTGGTAAGCAAATTAGAAAATCTTGATTTTGACAAACTTCGTGTGAAAACTGGGGAGGCACTTGCAATAAGTTCTATTCTTCAATTACATTCCCTTTTGGCCTGGGATGATGAAGCCATGCAGAGAAAATCTCCTCATCTTTTAAAAAGTTCAAATGGAATTCACCTGCAAAGAGTCCTGCCAATGAGCCAAAGTACATTGGGTGATTTACTTGAGAAAGATATGGTAAATGGGTATACCCCAAGTCCTGACTCAACCTCATCATCACCAGCATCTTTGACTGCTTCAAATTCAATGAGTATGGAGACTTTTCTTAATGCCTTATGGGGATTATCACCAAAGGTCATGGTTGTGACCGAACAAGACTCTAATCACAATGGTCCAACTCTGATGGATAGGCTACTGGAAGCTCTATATTCCTATGCAGCATTGTTTGATTGTTTGGAATCCACTGTATCAAGAACATCATTGGAGAGATTAAGGGTGGAGAAGATGCTTTTTGGTGAGGAAATAAAGAACATTATTGCATGTGAGGGATCTGAACGAAAGGAGAGACATGAAAAGCTGGACAAGTGGTTCCAGAGATTTGATGTAGCTGGGTTTGGTAACGTGCCTTTGAGCTATTTTGGCATTTTGCAAGCAAGGAGGGTCCTGCTGAGCTATGGTTGTGAAGGATATAGAATGAGGGATGAAAATGGTTGTGTGTTAATTTGCTGGCAGGATCGGCCAATGTTTTCAATATCCGCTTGGAGATCTAGGAAGTAA 1431 0.4263 MGFMLQEGSSSVNSSPLKLFSMMSLSPSLGSPNNLLLREMKSEERGLYLIHLLLTCANHVAAGNLENANTTLEQISLLASPDGDTMQRIAVYFMESLADRILKTWPGIHRALNSTRMTMLSEEILVQKHFFELFPFLKVAFVLTNQAIVEAMEGEKMIHIIDLNAAEAAQWIALLQVLSARPEGPPHLRITGVHQKKEILDQVAHRLTEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLAWDDEAMQRKSPHLLKSSNGIHLQRVLPMSQSTLGDLLEKDMVNGYTPSPDSTSSSPASLTASNSMSMETFLNALWGLSPKVMVVTEQDSNHNGPTLMDRLLEALYSYAALFDCLESTVSRTSLERLRVEKMLFGEEIKNIIACEGSERKERHEKLDKWFQRFDVAGFGNVPLSYFGILQARRVLLSYGCEGYRMRDENGCVLICWQDRPMFSISAWRSRK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00232 476 MobiDBLite consensus disorder prediction 297 316 - -
Cca04g00232 476 ProSiteProfiles GRAS family profile. 40 473 IPR005202 -
Cca04g00232 476 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 475 IPR005202 -
Cca04g00232 476 PANTHER SCARECROW-LIKE PROTEIN 3 7 475 IPR030008 GO:0003700|GO:0005634|GO:0009739
Cca04g00232 476 MobiDBLite consensus disorder prediction 301 316 - -
Cca04g00232 476 Pfam GRAS domain family 49 473 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00232 Cca-Chr4 2227273 2229799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00232 1 476 GRAS Transcription Factor Family AT1G50420 64.682 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g00232 GRAS 3e-135 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00232 - - gmx:100814131 846.654