Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00229 ATGGAGTTCGTGGGGAAAGCCGTTAGGAAAGAGGTGAAGGGGGTTGGGTTTGTCTCGGGAACAGTGAAATCCTACGAACCTTCCTCTGGTTTTTTCGAGATCGTTTACGAAGACGGCGATTCTGAGGAGTTGGAGTCCTCTGACGTGGCTGCTCTTCTGCAATCTCAGCCGGAGACTGTCAAGGCCAAGCCTCGGGTCGGTCGGAAACCTAAGAAGCGCCGTCGCGTCGAGCGGAGGCGCGATTCCGGAGCCGTTTCAGGTAATGCTAGCGAGAATTCGCTGCCGGAGGGTAGTGATTTTAGGGGGGTTTTGGATGGTGATGCTTCTGCTGGTGCTAGTGAGAATTTGGAACTAGGTTGTGGTGGGTTTGAGAGAGCCTTGGATGTGGGAATTGGGAATGGAGGGAATCTTATGGGCAATGTTAATGGGACTGTGAAGGAAAACGGGGTAAGAGAGACAGAGGGTAAGGAAATTGGTTTGGAAGATAGTTTGGATAAGAATGTTGTTGCTAATGGTAATTGTGTCAATGATGGGCTTGATTTGAATGCTGGTCTTAATCTTAACGAGGATTTAAATTTGAATGATGCATTTAATTCGCCGTCGAACACTGAGGATGGTTTGAAGAGGAGAGATTGCATTGATTTAAATTTGGATGTGTGTGCTGAGGATGATGTCAGCCCGAATGTTGGTTGTTCGGGAGGGGAGACGTTACAGCGGGAGTGTAACTTTGATTTAAACGTGGAGGTGTGTGAGGAAGTTAAGGAAACTCAGTGTGATGCTGACAGAAATGGACATCCTGACCTAGGTGATGCTTTGTTTGGTAAGATGGGACAGCTCGGAAAGGAAGAGATAAATATTAGTATGGGTTCCGTCAAAGAGGATGGTGTTCAAGGTAATTTGAATCATGTATCTGATGCTGTCAAATTGGAGGTAGTTCATGTTTCTGGTGTGTATGCAGCTGAAGATGCTTCTTTGTGTTTGGTTGAAGAGAATGGAGGCAATGATGGCAAAGAAGATGCAGCAGCTATTGGTTCTCATCAGGTTTCAAATGCTATTTCTGTTAGGGATTCTGATTCTGTGGAGGTTCAGCAAATGGATTGTCCTTCTGAAGGCGGTGTTGCCATAATTCATGAATACCAAGACGATCCAGGTAGTCCATGTGAACCAGGAAATGGTCGAAGGAAGAGAAGAAAAGTATCAGATAATCTGAAAGCGTCACCAGAGACAGTTTTAAGGAGGAGTTCTCGTCGAGCATCAGCTAGAAAACGGGTTTCAAGCACTGTACTGGTGGAGGTGACTGAAGATCCTTTGTTGTCCATGGAAACCAGTGCCTTAACAGAAGAAAAGCCTCTAATCCCTAATTCTCAGAAATACGGGCAATGCAATGATCCTCTTCCAAAGCTTCAATTACCCCCGTCTTCTACAAGTTTGAATTTAGATCATGTTCCTGTTCTTGAACTTTTTTCTATTTATGCCTGTTTAAGATCGTTCAGTACTTTCTTGTTTTTGAGTCCATTTGAGTTGGAGGATCTTGTAGCTGCACTAAAGTCTGAAATCCCAAGTATATTATTTGACAGCATTCATGTTTCTATCTTGCAAACTCTGCGAAAGCATTTGGAATTCCTTTCTAATGAGGGTTGCCAATCTGCTTCCAGTTGTCTGAGGAATCTTAACTGGGATTTTTTGGACCTGGTCACATGGCCTATTTTCATGGCTGAGTACCTTTTGATTCATGGCTCAGGATTTAAAACTGGTTTTGATCTTAAACACCTAATGCTCAGAACTGATTACTACAAACAACCTGTAATTGTGAAGGTTGAAATTCTTCAGTACCTGTGTGATGATATGATTGAATCAGAAGCCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACTGAGGCTGATATAGGTTTTGATCAGAATATGTATTTTGACACTTGCAAGAAAAGAAAAGCTGTAATGGATGTGTCTGGTGGCTCTTGCTTGACCGAGGAGAATGTGGATAACCCAACTGACTGGAACAGTGATGAATGTTGCCTCTGCAAGATGGATGGTAGTTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCAAGATGTGTGGGAATTGTCAGTGACAGTCTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGGTGGCAAAAACAGGGCTTGGATGAAATCACGGAGGTCACTTCGAGGAGCAGACTTATTAGGGATTGATCTGGATGGCCGTCTCTATTTTAACAGCTGTGGTTACCTGTTGGTGTCAAGTTCATCTGAAATAGAGTCATCGTTCAATTACTACCACAGAAATGATCTACATGTAGTAATTGAAGCTCTAAAATCTATGGATCCTTTATACGAAGGCATATTAATTGCTATCTATAAGCATTGGGATATCCCTGCTAACTTGAGTATGGGGGATAGTGTCTTTAATCATAGTTCCTGTAAGAACATGCAGATGAAGGGAGAATATTCTACTATGCATACATCTTTAGGACCTTTGACTTCAGAGACATTTTTGGACAAGAATCAGGCTAATGATCAAAGAAAGTTGGATGATAATTCAACTAATGACTGTTGTATGCATCTTGGCCAAGAGTTTCCAAAGTCTGGGAACCGTCTAGATTCAACGACCACCATAGAAAGTCCTTGTGTTGTTTCAGAAGGATCAGCTGATACCACACAGATGAAAACAGGCATCGAGAATGTTCAGATATATGGGCTCAATGATTCCAATAGATGTGATGATTCCTTGAATCAGCTAGGAATACCAGAAAGATGCCATCCTGTTGGTGACTGTTCTTTGACATCTTCCAGCTTAGACGTGGGACGTAAAATAAACTTAAGATCTGTAGGTGCTAGCAGTACCCCCTCAACAGACAATAAGGATACTTCAAAAGCACCTTGTGGAATTGACTACATAAACTATTATAGCTTTGCCCGAACGGCTTCCTTTGTTGCACAGGAGTTGATGTGCAAGTCACCTGAAAAAATGAATAAGATTTTTGCAATGTCTGAAGAAGAAATTATTTCAGACCAAGCAAAAGTCATTATGAAAAAATCTGCTAACTTCTGTTGGCCAAGTATTCAGAACTTGAGTGCAGCTGCCCAAAAAGAAAAATGTGGGTGGTGCTATACTTGCAAAGTTGCAAATGAGGACAGGGATTGCTTGTTTAATTCTGTGGTGAAGCCTGCTTGGGAAGTGTCTAAGACTAATAGTACTTTAGTTGGGCTTCAACCCAGGAAGATTCAGAATGGACATCTTAGAGATATCATATGTCAGATCTTCTCTCTTGAGGTTCGGTTACGTGGGCTTTTGTTGGGTCCATGGTTGAATCTGCATCAGACTAATCTTTGGCATAAGGATCTTTTGAAGTCATATGATGTTCTTCCTGTTAAACAATTATTGCTTCTTTTAGAATCCAATTTACGGCCTCTTGGACTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGTTGCTACAATGGGATCCTCTGCTCATATTGTAGTCAGTTCATCACGCTCATCGTCAAGGCATGGTATTGGAAGGAAAAGGGCCAGACATTCAGATATTGAAACCAGTTCATCTTCAAACACTGCTAGTGGTTTGGGGATGTACTGGTGGAGAGGTGGTAGGCTTTCCCGAAAATTGTTTAATTGGAAGGTTTTGCCTCACTCCTTGGTTACCAAGGCTGCTCGACAAGGTGGGTGTAGGAAGATACCAGGCATTTTATATCCTGAGAATTCAGATTTTGCACGGAGAAGCAGATATGTTGCCTGGCGAGCTGCTGTTCAGATGTCAACTAGTGCTGAGCAGCTTGCTTTACAGGTTAGAGAGCTTTATTCAAACATAAGGTGGCATGATATTGAGAACAGCCATCCCCTATATGTGTTGGACAAGGAATCTAGAAAATCAGTCAGGCTGTTCAAAAAGGCAATTGTACGCAGGAAGTGCACTGAAGGGCAATCTGTGAAATACCTTATTGATTTTGGGAAGAGAAGGGCTATTCCAGATGTTGTTATTAAACATGGTTCTTTGTTGGAACAATCCTCTAGTGAGAGAAAAAAATATTGGCTGGAGGAGTCTCATGTTCCATTGCATCTTCTAAAGAATTTTGAGGAAAAAAGAATTGTTCGCAAGTCCACTGATAAGAAACTCGGAAAAATTCTTGAGGTGGGTAGAGTAAACAAGAAAACTCGTCAAGAAAGGGGGTTTTCATATTTGTTTACCAGATTGGAAAGATCTGATTATCATCAGTGCGGGCACTGCAAGAAAGATATTGCAATGAGGGATGGTGTGAGGTGCCTTCATTGCAAAGGATATTTCCACAAGAGGCATGTCAGGAAATCAGGTGGGACAAGGACTACTGGAAGCACATATTCATGTCACAGATGTCAGGATGGGTTGCCTGCAAAGACTAATACTAATAAAAGGAAAATTGACTCAAAACTGCAGAAGATTCAAGCAAAGAAACGTAAAACTGTTCCTTCAGTTTGCAAATCAGTGAACCTCAAGGGCAATAAAAAGACATTGAGCAAGATACGACAGGTGAGGTCTCGAAACAGTAAGAATATCCCATCAAGTGTACCTCTTCGCCGTTCTACTAGGAAGGCCAAATCCTTGTATATGCATAATCAAATGAATGGAGGACATAAAAAAGGAAAGCAAGGTAAAAAGAATGTGGGGCGTAAAAAGGGAAAGCAAAGTAAATCGAAGCTGACCTCTCAGAAGTCCAAGGAAACCACTAGTCAACATAAAAAGTTGGCAGTAATAACTGCACTTAAGAAGAGAGCAAAAATCTGTAGCAGTTACTGGCATAATGGTCTTCAGTTGTCCAGAAAGCTAAATGATGAACGAGTAACGCTGTTTAAAGAGAAAAAGCGTGTTGTCTTCTCTGATGATTTTTCTGTCTCTCTTGATTATCCTAAATGCAGCCTTTGTTGTGGAAATGAGTGCACTTTGTGTTATATTGCTTGTGAAATCTGTGGAGATTGGTTTCATGGTGATGCTTTTGGGCTCAACGCGGAGAATGCCAGACAACTTATTGGATTTAAGTGCCATGTTTGTCTTGATAGAACTGCTCCAATCTGTCCCCATATGAAGATTAATGCATTGTCTCGCACTGAAAGCAATGCTGCAATCGATGGTGCAGAGGAACTATCTAATCCTGTTTCTCTCCAACCTTCAAGCGAGATCCCTTGCAATTAA 5220 0.4188 MEFVGKAVRKEVKGVGFVSGTVKSYEPSSGFFEIVYEDGDSEELESSDVAALLQSQPETVKAKPRVGRKPKKRRRVERRRDSGAVSGNASENSLPEGSDFRGVLDGDASAGASENLELGCGGFERALDVGIGNGGNLMGNVNGTVKENGVRETEGKEIGLEDSLDKNVVANGNCVNDGLDLNAGLNLNEDLNLNDAFNSPSNTEDGLKRRDCIDLNLDVCAEDDVSPNVGCSGGETLQRECNFDLNVEVCEEVKETQCDADRNGHPDLGDALFGKMGQLGKEEINISMGSVKEDGVQGNLNHVSDAVKLEVVHVSGVYAAEDASLCLVEENGGNDGKEDAAAIGSHQVSNAISVRDSDSVEVQQMDCPSEGGVAIIHEYQDDPGSPCEPGNGRRKRRKVSDNLKASPETVLRRSSRRASARKRVSSTVLVEVTEDPLLSMETSALTEEKPLIPNSQKYGQCNDPLPKLQLPPSSTSLNLDHVPVLELFSIYACLRSFSTFLFLSPFELEDLVAALKSEIPSILFDSIHVSILQTLRKHLEFLSNEGCQSASSCLRNLNWDFLDLVTWPIFMAEYLLIHGSGFKTGFDLKHLMLRTDYYKQPVIVKVEILQYLCDDMIESEAIRSELNRRSLVTEADIGFDQNMYFDTCKKRKAVMDVSGGSCLTEENVDNPTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIVSDSLPEGDWYCPECGGKNRAWMKSRRSLRGADLLGIDLDGRLYFNSCGYLLVSSSSEIESSFNYYHRNDLHVVIEALKSMDPLYEGILIAIYKHWDIPANLSMGDSVFNHSSCKNMQMKGEYSTMHTSLGPLTSETFLDKNQANDQRKLDDNSTNDCCMHLGQEFPKSGNRLDSTTTIESPCVVSEGSADTTQMKTGIENVQIYGLNDSNRCDDSLNQLGIPERCHPVGDCSLTSSSLDVGRKINLRSVGASSTPSTDNKDTSKAPCGIDYINYYSFARTASFVAQELMCKSPEKMNKIFAMSEEEIISDQAKVIMKKSANFCWPSIQNLSAAAQKEKCGWCYTCKVANEDRDCLFNSVVKPAWEVSKTNSTLVGLQPRKIQNGHLRDIICQIFSLEVRLRGLLLGPWLNLHQTNLWHKDLLKSYDVLPVKQLLLLLESNLRPLGLSADWLKHVDSVATMGSSAHIVVSSSRSSSRHGIGRKRARHSDIETSSSSNTASGLGMYWWRGGRLSRKLFNWKVLPHSLVTKAARQGGCRKIPGILYPENSDFARRSRYVAWRAAVQMSTSAEQLALQVRELYSNIRWHDIENSHPLYVLDKESRKSVRLFKKAIVRRKCTEGQSVKYLIDFGKRRAIPDVVIKHGSLLEQSSSERKKYWLEESHVPLHLLKNFEEKRIVRKSTDKKLGKILEVGRVNKKTRQERGFSYLFTRLERSDYHQCGHCKKDIAMRDGVRCLHCKGYFHKRHVRKSGGTRTTGSTYSCHRCQDGLPAKTNTNKRKIDSKLQKIQAKKRKTVPSVCKSVNLKGNKKTLSKIRQVRSRNSKNIPSSVPLRRSTRKAKSLYMHNQMNGGHKKGKQGKKNVGRKKGKQSKSKLTSQKSKETTSQHKKLAVITALKKRAKICSSYWHNGLQLSRKLNDERVTLFKEKKRVVFSDDFSVSLDYPKCSLCCGNECTLCYIACEICGDWFHGDAFGLNAENARQLIGFKCHVCLDRTAPICPHMKINALSRTESNAAIDGAEELSNPVSLQPSSEIPCN 1739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00229 1739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 671 736 IPR013083 -
Cca04g00229 1739 SMART PHD_3 678 721 IPR001965 -
Cca04g00229 1739 SMART PHD_3 1423 1470 IPR001965 -
Cca04g00229 1739 SMART PHD_3 1647 1694 IPR001965 -
Cca04g00229 1739 SMART testlast3 481 541 IPR018501 -
Cca04g00229 1739 CDD PHD1_AIRE 678 720 - -
Cca04g00229 1739 PANTHER PHD FINGER FAMILY PROTEIN 1 1711 - -
Cca04g00229 1739 MobiDBLite consensus disorder prediction 1555 1576 - -
Cca04g00229 1739 ProSiteProfiles DDT domain profile. 481 541 IPR018501 -
Cca04g00229 1739 ProSitePatterns Zinc finger PHD-type signature. 679 720 IPR019786 -
Cca04g00229 1739 MobiDBLite consensus disorder prediction 1180 1201 - -
Cca04g00229 1739 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 1 1711 - -
Cca04g00229 1739 MobiDBLite consensus disorder prediction 1547 1586 - -
Cca04g00229 1739 MobiDBLite consensus disorder prediction 379 419 - -
Cca04g00229 1739 MobiDBLite consensus disorder prediction 46 106 - -
Cca04g00229 1739 Pfam PHD-finger 679 720 IPR019787 -
Cca04g00229 1739 Pfam DDT domain 485 537 IPR018501 -
Cca04g00229 1739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1642 1700 IPR013083 -
Cca04g00229 1739 SUPERFAMILY FYVE/PHD zinc finger 663 720 IPR011011 -
Cca04g00229 1739 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 597 627 IPR028942 -
Cca04g00229 1739 ProSiteProfiles Zinc finger PHD-type profile. 676 723 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00229 Cca-Chr4 2183374 2199771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00229 1 1705 PHD Transcription Factor Family AT5G12400 41.119 0.0 1123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Cca04g00229 DDT 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00229 - - gmx:100800973 2749.16