Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00213 ATGAACATGGAGATGGAGATAGAAGCAGCCACAAGTGAGAGGGAGGTGCAGCCATACACTGGCTTTGACAGAGGAACCTTCTTGGCTTGGGAAGATCTCAGAGTTATCATTCCAAACTTTGGTAAGGGACCAACCAAGAGGTTGCTTAATGGCCTTAATGGCTATGCTGAGCCTGGTAGAATCATGGCTATTATGGGTCCTTCTGGCTCTGGAAAATCCACTCTCCTTGATTCACTTGCAGGTAGACTCTCAAAAAATGTGGTTATGACAGGAAATGTTCTTCTCAATGGGAAGAAAAAAGGCTTAGGCTACGGTGTTGTTGCTTACGTAACTCAAGAGGATGTTCTGCTGGGAACACTTACTGTGAAGGAAACAATATCTTACTCAGCACATCTACGTCTTCCAACATCAATGAGCAAAGAAGAAGTTGATAGCATCATCGATGGAACAATCATAGAAATGGGTCTCCAAGACTGTGCTGATAGGTTGATTGGAAACTGGCACTTGAGAGGCATAAGTGGAGGGGAGAAAAAGAGACTCAGCATTGCTCTTGAAATCCTCACCAGGCCTCGCTTACTGTTTCTTGATGAACCAACCAGTGGCCTTGATAGTGCCTCTGCATTTTTTGTTGTTCAAACTCTCAGAAATGTTGCTCGTGATGGAAGAACAGTTATCTCTTCCATTCACCAACCTAGCAGTGAAGTCTTTGCACTCTTTGATGACCTTTTCTTACTATCTGGCGGCGAAACGGTTTATTTTGGAGAAGCAAAATCTGCAATTGAGTTTTTTGCTGAAGCTGGTTTTCCTTGTCCACGTAAAAGAAATCCTTCTGATCATTTCCTACGATGTATCAATTCTGATTTCGACATTGTGACAGCTACACTGAAGGGATCTCAAAGAATTCATGATGTTCCAAATTCATCAGATCCTTTCTTGAATCTGGCCACAGCAGAGATTAAGGCAATGCTAGTTGAGAAATATAGGCGTTCAACATATTACAGAAGGGCAAAGAACAGAATTCAAGAGCTATCTACCGATGAAGGGCTTCAACCTCCGACACAACATGGAAGTCAAGCTAGTTGGTGGAAGCAACTGTGGACGTTGACAAAGAGATCATTTGTGAACATGTGTAGAGATGTCGGTTATTACTGGTTGAGGATCATAATTTACATCATTGTATCCATATGTGTGGGAACCGTTTATTTTGATGTTGGCTACAGCTACACTTCCATCCTTGCCCGTGGTGCCTGTGGTGCATTCATATCAGGATTTATGACATTCATGTCAATTGGTGGCTTTCCATCATTTATTGAAGAAATGAAGGTTTTTTATCGAGAAAGGCTTAACGGATATTATGGAGTTGCAGCATATATTTTAGCCAACTTTCTTTCTTCGTTCCCATTCTTGGTTGCAATTGCTCTTACTAGTTGCACCATAACCTATAACATGGTGAAATTCAGGCCAGGGATTAGTCACTTTGTGTTTTTCACTCTCAACATCTACAGCTGCATCTCCGTAATTGAAAGCCTCATGATGGTTGTGGCTTCACTTGTTCCAAATTTCCTCATGGGAATAATTACAGGGGCTGGAATAATAGGAATCATGATGATGACCTCCGGATTCTTCAGGTTGCTTTCTGATCTTCCAAAACCGGTTTGGCGCTACCCAATTTCTTATATCAGTTATGGTTCCTGGGCAATACAGGGTTCATACAAGAATGACTTGCTTGGGCTTGAGTTTGAACCTATGCTACCTGGTGACCCAAAAGTGACTGGAGAGTACGTGATCACACACATGTTAGGCATTGAATTAAACCATTCAAAGTGGTTGGACTTAGCAGCTCTATTTGTGATTCTCATTTGTTACAGACTTCTCTTCTTTACTGTTCTGAAGTTCAAGGAGAGAGCATCACCATTGTTTAAGACACTTTATGCAAAGAGAACCATACAACAGCTTGAAAAAAGACCCTCTTTCAGGAAGATGCCATCTTTCCCTTCACAGAGGCACCAACCCCTCCATTCACTTTCTTCACAAGATGGTCTTGATTCTCCACTCAACTAG 2061 0.4192 MNMEMEIEAATSEREVQPYTGFDRGTFLAWEDLRVIIPNFGKGPTKRLLNGLNGYAEPGRIMAIMGPSGSGKSTLLDSLAGRLSKNVVMTGNVLLNGKKKGLGYGVVAYVTQEDVLLGTLTVKETISYSAHLRLPTSMSKEEVDSIIDGTIIEMGLQDCADRLIGNWHLRGISGGEKKRLSIALEILTRPRLLFLDEPTSGLDSASAFFVVQTLRNVARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKSAIEFFAEAGFPCPRKRNPSDHFLRCINSDFDIVTATLKGSQRIHDVPNSSDPFLNLATAEIKAMLVEKYRRSTYYRRAKNRIQELSTDEGLQPPTQHGSQASWWKQLWTLTKRSFVNMCRDVGYYWLRIIIYIIVSICVGTVYFDVGYSYTSILARGACGAFISGFMTFMSIGGFPSFIEEMKVFYRERLNGYYGVAAYILANFLSSFPFLVAIALTSCTITYNMVKFRPGISHFVFFTLNIYSCISVIESLMMVVASLVPNFLMGIITGAGIIGIMMMTSGFFRLLSDLPKPVWRYPISYISYGSWAIQGSYKNDLLGLEFEPMLPGDPKVTGEYVITHMLGIELNHSKWLDLAALFVILICYRLLFFTVLKFKERASPLFKTLYAKRTIQQLEKRPSFRKMPSFPSQRHQPLHSLSSQDGLDSPLN 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00213 686 Pfam ABC-2 type transporter 229 285 IPR043926 GO:0140359
Cca04g00213 686 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 28 272 IPR003439 GO:0005524
Cca04g00213 686 Pfam ABC transporter 49 200 IPR003439 GO:0005524
Cca04g00213 686 Pfam ABC-2 type transporter 364 573 IPR013525 GO:0016020|GO:0140359
Cca04g00213 686 MobiDBLite consensus disorder prediction 663 686 - -
Cca04g00213 686 MobiDBLite consensus disorder prediction 654 686 - -
Cca04g00213 686 ProSitePatterns ABC transporters family signature. 172 186 IPR017871 GO:0005524
Cca04g00213 686 SMART AAA_5 58 229 IPR003593 -
Cca04g00213 686 CDD ABCG_EPDR 28 254 - -
Cca04g00213 686 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 25 681 - -
Cca04g00213 686 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 25 681 - -
Cca04g00213 686 Gene3D - 30 266 IPR027417 -
Cca04g00213 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 264 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00213 Cca-Chr4 2023938 2029841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00213 32 241 Calmodulin-binding Proteins AT2G36910 30.317 1.07e-11 66.6