Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00211 ATGGAGATAGAACAAGAAGCAAGTAGGAATGAAAAGAGTGTTGGTGAGTGTGGTGATGAAATGATGAGAGTTTGTGATGATAAGAGAAGGATGTATTATGTTGTGTGGGAAGATTTAAGTGTTGTAGTTCCAAACTTTGGGAATGAACACACAAAGAGGTTGCTGAATGGGTTGAGTGGATATGCTGAACCAAACAGAATCATGGCTATCATGGGTCCTTCTGGCTCCGGAAAATCTACTCTTCTTGATGCTTTGGCAGGAAGACTCTCTAGAAACGTTATCATGTGTGGAAACGTGCTTTTAAATGGAAAGAAGAGGAGATTAGACTATGGAGTTGTAGCTTATGTGACCCAAGAAGACACATTGCTGGGAACACTAACAGTGAGAGAGACAATATCTTACTCAGCCAATCTAAGGCTCCCATCTAGCATGAGCAAAGAAGAGGTGAATGACTTGATAGAGGGAACAATCATGGAAATGGGTCTTCAAGAGTGTGCTGATAGGCTTATAGGGAATTGGCATTTGAGAGGCATAAGCGGTGGAGAAAAGAAAAGACTAAGCATAGCACTTGAAATCCTCACAAGGCCTTCCCTCTTGTTCCTTGATGAACCCACCAGCGGTTTGGACAGTGCCTCAGCATATTTTGTTGCTCAAACTTTGAGAAACATAGCTCATGATGGCAAGACTGTTATCTCTTCTATACATCAGCCAAGTAGTGAAGTTTTCTCACTCTTTGACCATCTCTTTCTTCTTTCTGGAGGTCAAACTATTTACTTTGGAGCAGCACAAAAGGCAGTTGAGTTCTTTGCCACAGCGGGATTCCCATGTCCAAGCAGAAGAAATCCTTCAGATCATTTCCTCCGTTGTATTAATTCAGATTTTGACGCTGTCACGACCACTATGTCCCAAAGAACTCATGAAGGAATATCATTAACGGGGTCATTATCAACTGCAGAAATCAAAGCAATACTCATAGAGAAATACAGATGGTCAGAGCACGCAACCACCGCAAGAGCAAGAATCAAAGAAATCTCAAACATTCATGAAGGACGTGATGTTGAACGTAAAAGCAAATGCGAAGCAAAATGGTGGAAGCAACTATCAACGCTGACTCGTAGATCTATGGTGAACATGTCAAGAGATGCGGGATACTACTGGATAAGGATAGCTGTCTATGTTGTCTTATCTTTGTGTGTTGGAACAATCTTTCATGGAGTTGGATTGAGTTATAGAGACATTTTTGCGAGAGGATCATGTGCTGCTTTTATATCAGGCTTCATGTCATTCATGTCCATAGGGGGTTTCCCGTCTTTCATAGAAGAAGTGAAGGTGTTCTACAAAGAAAGACTGAATGGGTATTATGGCGTTGGCGTCTACATTCTATCAAATTTTCTCTCTTCCTTTCCCTTTGTAGCAGGGATGTCCATTTTAACGGGGACAATAACCTATTATATGGTTAATGGGTCTCATTCAGAATTTTCACATTTGTTGTATATCTGTCTGGATCTTATGGGCTCCATAGCGGTTGTGGAGAGCTCCATGATGATTATAGCTTCACTGGTTCCCAACTTCCTCATGGGATTGATAATTGGAGCGGGATATGTTGGTGTTTTGATGATGACTTGTGGCTATTTCCGTCCGATCCCTGATCTTCCCAAAATCTTCTGGCGCTACCCAGTATCATACATCAATTATGGCGCATGGGGATTGCAGGGAGAATACAAGAATGACTTGATTGGGAAAGAGGAGAGAGCTGCACCTTTCCTTTATGGTATCTACGCCAAGCAAACACTGCACCGTATTAAGAAGCGACCTTCGTTCAGGAAAGCACCATCTTTCCCTTCAAAGCGTCACCAGTCACCACATCCCTTGTCTTCTCAAGAGGGTCTCAACTCCCCTATTCATTAG 1908 0.423 MEIEQEASRNEKSVGECGDEMMRVCDDKRRMYYVVWEDLSVVVPNFGNEHTKRLLNGLSGYAEPNRIMAIMGPSGSGKSTLLDALAGRLSRNVIMCGNVLLNGKKRRLDYGVVAYVTQEDTLLGTLTVRETISYSANLRLPSSMSKEEVNDLIEGTIMEMGLQECADRLIGNWHLRGISGGEKKRLSIALEILTRPSLLFLDEPTSGLDSASAYFVAQTLRNIAHDGKTVISSIHQPSSEVFSLFDHLFLLSGGQTIYFGAAQKAVEFFATAGFPCPSRRNPSDHFLRCINSDFDAVTTTMSQRTHEGISLTGSLSTAEIKAILIEKYRWSEHATTARARIKEISNIHEGRDVERKSKCEAKWWKQLSTLTRRSMVNMSRDAGYYWIRIAVYVVLSLCVGTIFHGVGLSYRDIFARGSCAAFISGFMSFMSIGGFPSFIEEVKVFYKERLNGYYGVGVYILSNFLSSFPFVAGMSILTGTITYYMVNGSHSEFSHLLYICLDLMGSIAVVESSMMIIASLVPNFLMGLIIGAGYVGVLMMTCGYFRPIPDLPKIFWRYPVSYINYGAWGLQGEYKNDLIGKEERAAPFLYGIYAKQTLHRIKKRPSFRKAPSFPSKRHQSPHPLSSQEGLNSPIH 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00211 635 SMART AAA_5 64 254 IPR003593 -
Cca04g00211 635 Pfam ABC-2 type transporter 235 291 IPR043926 GO:0140359
Cca04g00211 635 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 30 582 - -
Cca04g00211 635 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 582 630 - -
Cca04g00211 635 MobiDBLite consensus disorder prediction 618 635 - -
Cca04g00211 635 ProSitePatterns ABC transporters family signature. 178 192 IPR017871 GO:0005524
Cca04g00211 635 Pfam ABC transporter 55 206 IPR003439 GO:0005524
Cca04g00211 635 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 30 582 - -
Cca04g00211 635 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 582 630 - -
Cca04g00211 635 Pfam ABC-2 type transporter 366 572 IPR013525 GO:0016020|GO:0140359
Cca04g00211 635 CDD ABCG_EPDR 33 260 - -
Cca04g00211 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 274 IPR027417 -
Cca04g00211 635 Gene3D - 25 272 IPR027417 -
Cca04g00211 635 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 34 278 IPR003439 GO:0005524
Cca04g00211 635 MobiDBLite consensus disorder prediction 605 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00211 Cca-Chr4 1988732 1995400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00211 53 249 Calmodulin-binding Proteins AT2G36910 29.358 2.31e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00211 K05681 - gmx:100806806 1030.39