Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00192 ATGGCTTACATGTGTGCCGACAGCGGCAACCTAATGGCGATTGCGCAGCAAGTGATAAagcagaagcagcagcaagagcagcagcagcagcagcagcaacaacaacagcagcagcagcaACAAAACCCTCTCACGCCACTCTCCCTGCATCCAATTCCATGGAACAACACTCCTCCACTCGGCTACCCTCTCCCTCCCTCCGATTTCCCCGACCCCTTCCAGCCAGACCCCCCCTTCCACTTCTCCACCGCCCCATTCCGCTTCTCCGACTTCGACTCCGACGACTGGATGGACACCCTCATCGCCACCCCCGCCTGGCACACCAATGCCGACTTCCCCTCCGCCTCCGATCTCAACCGCCTCATCTTCCCCTCCCACTCCGACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccgcccccgccccctcccccaccgcaggaccaccctctccactccaccaccgcctccgacgccgcacacccccTCCTCAACTGCGCCTCCCTCGCCGAAACCCAACCGGATCAAGCCCTCGAAGCCCTAACCCGCATCCGCAAATCCGCATCCCAACATGGAACCCCCACGCAGCGAAAAACCCAACCACTTCGGAGGAGCTAACTCTCTCTTACAAAGCCCTCAACGACGCTTGCCCTTACTCCAAATTCGCTCACTTAACCGCCAACCAAGCCATCCTGGAAGCCACCGAAGGCGCCTCCAACATCCACATAGTCGACTTCGGCATCGTGCAGGGGATCCAATGGGCCGCGCTCTTGCAGGCCTTCGCCACTCGGGCCTCCGGCAAGCCCAACAAGATCAAAATCTCCGGAATACCCGCCATCGCCCTTGGGCCCCACCCCGGCCCTTCTCTCTCCGCAACCGGCTACCGTCTCTCCGAGTTCGCGAAACTCCTCGAGTTGAACTTTGAGTTCGCGCCCATTCTCACTCCCATTCACCAACTCAACCACGCCAGCTTCAACATTCACCCAAACGAGGCCTTGGCCGTTAACTTCATGCTTCAGCTCTACAACCTCCTCGACGAGCCTCCCTCCGCCGTCGACACTGCGCTTAGGTTGGCCAAGTCGCTCAACCCTAAGATTGTCACGCTTGGTGAGTACGAAGCTTCCTTGACACGTGTGGGCTTCGTGAACCGCTTCAAGACCGCGTTTAGGTACTTCTCCGCCGTGTTTGAGTCTCTCGAGCCCAACTTGCCGGCGGACTCGCCGGAGAGGTTCCAGGTGGAGAGTCTTCTTCTCGGACGGCGAATCAATGCGGTTATTGGGCCTGGGCCCGTGAGGGAGAGGATGGAGGAGAAGGAGCAGTGGAGGGTTCTCATGGAAAGTGCTGGTTTTGAATCAGTCAGTCTCAGCCATTATGCAATTAGTCAAGCCAGGATACTTCTCTGGAATTATAGCTATAGTTCTCTGTTTTCACTCGTGGAGTCCACACCTGGGTTTTTGTCTCTGGCTTGGAAAGATGTGCCTCTGTTAACTGTTTCTTCATGGCGTTAA 1527 0.501 MAYMCADSGNLMAIAQQVIKQKQQQEQQQQQQQQQQQQQQQNPLTPLSLHPIPWNNTPPLGYPLPPSDFPDPFQPDPPFHFSTAPFRFSDFDSDDWMDTLIATPAWHTNADFPSASDLNRLIFPSHSDXXXXXXXXXXXXXXXXXAPAPSPTAGPPSPLHHRLRRRTPPPQLRLPRRNPTGSSPRSPNPHPQIRIPTWNPHAAKNPTTSEELTLSYKALNDACPYSKFAHLTANQAILEATEGASNIHIVDFGIVQGIQWAALLQAFATRASGKPNKIKISGIPAIALGPHPGPSLSATGYRLSEFAKLLELNFEFAPILTPIHQLNHASFNIHPNEALAVNFMLQLYNLLDEPPSAVDTALRLAKSLNPKIVTLGEYEASLTRVGFVNRFKTAFRYFSAVFESLEPNLPADSPERFQVESLLLGRRINAVIGPGPVRERMEEKEQWRVLMESAGFESVSLSHYAISQARILLWNYSYSSLFSLVESTPGFLSLAWKDVPLLTVSSWR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00192 508 ProSiteProfiles GRAS family profile. 87 508 IPR005202 -
Cca04g00192 508 MobiDBLite consensus disorder prediction 18 51 - -
Cca04g00192 508 MobiDBLite consensus disorder prediction 52 79 - -
Cca04g00192 508 Coils Coil 12 42 - -
Cca04g00192 508 MobiDBLite consensus disorder prediction 18 84 - -
Cca04g00192 508 Pfam GRAS domain family 202 508 IPR005202 -
Cca04g00192 508 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 205 507 - -
Cca04g00192 508 MobiDBLite consensus disorder prediction 121 206 - -
Cca04g00192 508 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 205 507 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00192 Cca-Chr4 1762698 1764456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00192 210 508 GRAS Transcription Factor Family AT5G66770 73.510 1.91e-156 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g00192 GRAS 1.4e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00192 - - gmx:100800989 625.165